Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E02
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867...    96   1e-20
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716...    29   2.1  
09_06_0348 + 22452219-22452360,22452791-22452912,22453342-224534...    27   4.8  
06_01_0599 - 4327671-4330034                                           27   8.3  
05_06_0208 + 26385379-26385485,26385819-26385965,26385994-263860...    27   8.3  
01_05_0032 + 17380349-17381088,17382720-17382746,17382870-173830...    27   8.3  

>01_07_0191 +
           41885121-41885909,41886152-41886190,41886701-41886784,
           41887331-41887413,41887501-41887588,41887736-41887990,
           41888275-41888403
          Length = 488

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 43/112 (38%), Positives = 74/112 (66%)
 Frame = +3

Query: 90  DSDLEELVAIKLFSIDAIKFGEFITKSGIKTPVYFDLRVIVSYPETMELIANLLYDFALE 269
           D+   E + ++L +I+A+KFG F+ KSGI +P+Y DLR++V++P  +  +A+LL      
Sbjct: 2   DAAAMESLILELHAIEAVKFGAFVLKSGITSPIYLDLRMLVAHPRLLSTVASLLGSLP-A 60

Query: 270 NKIYNHICGVPYTALPIATLLSIKSKKSMLMRRKETKAYGTKKSIEGHYQSG 425
            + Y+ +CGVPYTALPIA++LS  +   ML+RR     +   + ++G +++G
Sbjct: 61  TRPYDLLCGVPYTALPIASVLSAAASVPMLLRRYHVTPHAAAECLDGSFRAG 112


>01_03_0216 +
           13870364-13870472,13871406-13871477,13871603-13871668,
           13871767-13871823,13871917-13871984,13872068-13872149,
           13872445-13872500,13872645-13872947,13873042-13873128,
           13873199-13873373,13873481-13873602,13873689-13873852,
           13873925-13874179,13874312-13874433,13874542-13874663,
           13875111-13875259,13875346-13875484,13875715-13875750
          Length = 727

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 288 ICGVPYTALPIATLLSIKSKKSMLMRRKETKA 383
           IC  P  +L I  LLS+K   +  +RR + KA
Sbjct: 25  ICNPPVNSLSIDVLLSLKENYAEALRRNDVKA 56


>09_06_0348 +
           22452219-22452360,22452791-22452912,22453342-22453436,
           22453691-22453844,22453952-22454014,22454329-22454478,
           22454650-22454982,22455086-22455820
          Length = 597

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 291 CGVPYTALPIATLLSIKSKKSMLMRRKETKAYGTKKSIEGHYQS 422
           CG+ Y  LP  TLL I S    L  +   +  G ++S   +  S
Sbjct: 376 CGLVYEHLPNGTLLDILSNSKSLSWKDRVRILGEQRSALAYLHS 419


>06_01_0599 - 4327671-4330034
          Length = 787

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 90  DSDLEELVAIKLFSIDAIKFGEFITKSGIKT 182
           DSDL +L + KLF +D    G ++  S + T
Sbjct: 599 DSDLAKLASQKLFELDPENSGYYVLLSNLHT 629


>05_06_0208 +
           26385379-26385485,26385819-26385965,26385994-26386035,
           26386231-26386275,26386375-26386544,26386779-26386864,
           26386953-26387060,26387680-26387809,26388144-26388231,
           26388511-26388555,26388639-26388808,26388931-26389016,
           26389115-26389222,26389332-26389381,26389521-26389725
          Length = 528

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 90  DSDLEELVAIKLFSIDAIKFGEFITKSGIKTPVYFDLRVIVSYP 221
           +S +  L      S+  +K+ +F     +K P YFD RV V YP
Sbjct: 113 ESKILSLCVSYFTSVYVMKWKDFFPNKELKEPPYFDGRV-VCYP 155


>01_05_0032 +
           17380349-17381088,17382720-17382746,17382870-17383038,
           17383259-17383327,17385364-17385699
          Length = 446

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 139 ASIENNLIATNSSRSLSLSHYYICYLFSNFKYTH 38
           A I NNLI   S   + + HY I Y+   F + H
Sbjct: 153 AMITNNLIWVVSRMHVQVDHYPIWYIILVFVFVH 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,671,024
Number of Sequences: 37544
Number of extensions: 170093
Number of successful extensions: 301
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)