Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_E02
(425 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067219-11|AAC17032.1| 227|Caenorhabditis elegans Hypothetical... 96 1e-20
Z35641-4|CAA84708.1| 497|Caenorhabditis elegans Hypothetical pr... 75 2e-14
Z29443-13|CAA82579.1| 497|Caenorhabditis elegans Hypothetical p... 75 2e-14
AF068713-20|AAC17803.2| 309|Caenorhabditis elegans Hypothetical... 28 3.2
AF067937-2|AAF99916.1| 381|Caenorhabditis elegans Choline kinas... 28 3.2
AC006636-2|AAF39797.1| 325|Caenorhabditis elegans Hypothetical ... 28 3.2
Z93393-15|CAE54926.1| 347|Caenorhabditis elegans Hypothetical p... 27 7.4
Z73899-1|CAA98073.3| 433|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z93381-2|CAB07605.1| 374|Caenorhabditis elegans Hypothetical pr... 26 9.8
>AF067219-11|AAC17032.1| 227|Caenorhabditis elegans Hypothetical
protein R12E2.11 protein.
Length = 227
Score = 95.9 bits (228), Expect = 1e-20
Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Frame = +3
Query: 123 LFSIDAIKFGEFITKSGIKTPVYFDLRVIVSYPETMELIANLLYD-FALENKIYNHICGV 299
L+ ++ + GEF KSG TP+Y DLR I+S P + + A + + N ++++ GV
Sbjct: 37 LYQMECFRTGEFYLKSGQMTPIYIDLRRIMSSPRVLRMAAQAMCEKIVASNLKFDYVVGV 96
Query: 300 PYTALPIATLLSIKSKKSMLMRRKETKAYGTKKSIEGHYQSG 425
PY ALP+ATL+S MLM+RKE KAYGTK+ IEG YQ G
Sbjct: 97 PYAALPLATLVSDILNVPMLMKRKEAKAYGTKQLIEGVYQPG 138
>Z35641-4|CAA84708.1| 497|Caenorhabditis elegans Hypothetical
protein T07C4.1 protein.
Length = 497
Score = 75.4 bits (177), Expect = 2e-14
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +3
Query: 120 KLFSIDAIKFGEFITKSGIKTPVYFDLRVIVSYPETMELIANLLYDFALENKI-YNHICG 296
++ KFGEF KSG +P+Y DLR +P + LI+ + +++ Y + G
Sbjct: 20 QMLKASVFKFGEFQLKSGQISPIYIDLRECFGHPGLLMLISEAISKQVEISEVQYAGVLG 79
Query: 297 VPYTALPIATLLSIKS-KKSMLMRRKETKAYGTKKSIEGHYQ 419
+PY ALP A++ + KK +L+ RKE K+YGTKK IEG YQ
Sbjct: 80 IPYAALPYASVAAGNYLKKPLLIVRKEAKSYGTKKLIEGLYQ 121
>Z29443-13|CAA82579.1| 497|Caenorhabditis elegans Hypothetical
protein T07C4.1 protein.
Length = 497
Score = 75.4 bits (177), Expect = 2e-14
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +3
Query: 120 KLFSIDAIKFGEFITKSGIKTPVYFDLRVIVSYPETMELIANLLYDFALENKI-YNHICG 296
++ KFGEF KSG +P+Y DLR +P + LI+ + +++ Y + G
Sbjct: 20 QMLKASVFKFGEFQLKSGQISPIYIDLRECFGHPGLLMLISEAISKQVEISEVQYAGVLG 79
Query: 297 VPYTALPIATLLSIKS-KKSMLMRRKETKAYGTKKSIEGHYQ 419
+PY ALP A++ + KK +L+ RKE K+YGTKK IEG YQ
Sbjct: 80 IPYAALPYASVAAGNYLKKPLLIVRKEAKSYGTKKLIEGLYQ 121
>AF068713-20|AAC17803.2| 309|Caenorhabditis elegans Hypothetical
protein T24A6.16 protein.
Length = 309
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 187 TGVLIPLLVINSPNFIASIENNLIATNSSRSLS-LSHYYICYLFSNFKY 44
T I + +P+F + +N LIA S+S+S L+ +C L++ +Y
Sbjct: 35 TKAFIKPFISYAPSFFTAPDNKLIACEISKSMSQLTLNLMCLLYNETQY 83
>AF067937-2|AAF99916.1| 381|Caenorhabditis elegans Choline kinase b
protein 4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 99 LEELVAIKLFSIDAIKFGEFITKSGIKTPVYFDLRVIVS 215
LEE + + +D+IK E + G P Y D+ V +S
Sbjct: 114 LEEFLPSRTLDVDSIKLPEIARQVGSLYPKYHDIEVPIS 152
>AC006636-2|AAF39797.1| 325|Caenorhabditis elegans Hypothetical
protein F40C5.1 protein.
Length = 325
Score = 27.9 bits (59), Expect = 3.2
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 187 TGVLIPLLVINSPNFIASIENNLIATNSSRSLS-LSHYYICYLFSNFKY 44
T I + +P+F + +N LIA S+S+S L+ +C L++ +Y
Sbjct: 35 TKAFIKPFISYAPSFFTAPDNKLIACEISKSMSQLTLNLMCLLYNETQY 83
>Z93393-15|CAE54926.1| 347|Caenorhabditis elegans Hypothetical
protein Y48E1B.16 protein.
Length = 347
Score = 26.6 bits (56), Expect = 7.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 294 GVPYTALPIATLLSIKSKKSMLMRRKETKAYGTKKSI 404
GVP P T+ ++ +KKS+ R KE KA G +K +
Sbjct: 115 GVPAPRAPQPTIPALTTKKSVFERLKE-KAKGKEKYV 150
>Z73899-1|CAA98073.3| 433|Caenorhabditis elegans Hypothetical
protein ZK829.3 protein.
Length = 433
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 213 SYPETMELIANLL-YDFALENKIYNHICGVPYTALPIATLLSIKSKKSMLMRR 368
SY T+E L+ ++F LEN++ + +C + +++ K M RR
Sbjct: 361 SYKSTIEDRQKLMKFEFELENRVSSEVCEIELMRDDFKCRVAMDYSKKMFRRR 413
>Z93381-2|CAB07605.1| 374|Caenorhabditis elegans Hypothetical
protein F28G4.2 protein.
Length = 374
Score = 26.2 bits (55), Expect = 9.8
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 246 LLYDFALENKIYNHICGVPYTALPIATLLSIKSKKSMLMRRKE 374
++YD + + + NHIC + + ++ L+++ + M KE
Sbjct: 78 IMYDSSNVDVVLNHICNIQFIPNTLSRLVALAFDREAQMALKE 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,886,039
Number of Sequences: 27780
Number of extensions: 169930
Number of successful extensions: 364
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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