Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_E02
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.088
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   1.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 0.088
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 312 LPIATLLSIKSKKSMLMRRKETKAYGTKKSIEGHY 416
           +P A+L+S  S KS+ +   ET  YG + +   HY
Sbjct: 739 IPRASLVSTTSVKSLRLEGDETPPYGMELTEAEHY 773


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 151 PNFIASIENNLIATNSSRSLSLSHYYICYL 62
           P  I+S+ NN    N + +    HY I Y+
Sbjct: 312 PKIISSLSNNYNYNNYNNNYKPLHYNINYI 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,224
Number of Sequences: 438
Number of extensions: 2026
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)