Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D24
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   3.0  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   3.9  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   5.2  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    24   9.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    24   9.1  

>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 71  HNPERDAYEALAACPHMRAVIPRYYREL 154
           +NP+  AYEA+  C  M     ++Y+EL
Sbjct: 651 YNPDTGAYEAVCKC--MSGFSDQFYKEL 676


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 227 IH*HVGHGSHEVNLEVR*IFLLHIPVHDSSEE*L--HAYADKRLELHTHHVPDYELDDPP 54
           +H H+ +   + NL V+ + LLH P  D  E  +    Y     +    +VPD E +D  
Sbjct: 312 LHRHITNKHKDFNLHVKQLGLLHKPSLDLEEGYIMDENYGKDVYKHGISNVPDDENEDDL 371

Query: 53  ER 48
           +R
Sbjct: 372 QR 373


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 65  DDPPERDVSIRFQDQRVPES 6
           D PPERDVS++    ++  S
Sbjct: 95  DQPPERDVSLKESSNKINPS 114


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 98  LHTHHVPDYELDDPPERDVS 39
           +HTH +  Y L D  E+D++
Sbjct: 298 IHTHELTKYFLSDSYEKDIN 317


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 110 CPHMRAV--IPRYYRELEYGGERFIELQDLLHGFRD 211
           C + RA+  + R  R L    E+F +LQD L  F++
Sbjct: 140 CTYHRAIGFVSRVRRALLSNPEQFFKLQDSLRKFKN 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,001
Number of Sequences: 5004
Number of extensions: 29578
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)