Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_D24
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0687 + 10413338-10413430,10413538-10413934,10414040-104141... 29 0.92
01_03_0223 + 13924231-13924510,13924670-13924893,13925482-139257... 29 1.2
05_05_0026 + 21645845-21647404 28 2.8
12_01_0160 - 1212295-1213586,1213828-1213976,1214288-1214445,121... 27 3.7
11_01_0161 - 1327286-1328592,1328819-1329000,1329279-1329436,132... 27 3.7
03_01_0341 + 2689367-2689619,2690520-2690782,2690865-2691033,269... 27 3.7
01_05_0674 - 24187820-24188713,24188809-24189204 27 3.7
08_01_0070 + 490655-493165 27 4.9
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 27 6.5
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566... 26 8.6
>03_02_0687 +
10413338-10413430,10413538-10413934,10414040-10414168,
10414370-10414517,10414647-10415925
Length = 681
Score = 29.5 bits (63), Expect = 0.92
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 104 LELHTHHVPDYELDD-PPERDVSIRFQDQRVPES 6
L+ H HH+P DD PP V F Q VP +
Sbjct: 513 LQAHYHHIPGVFTDDFPPMPPVFFDFTSQNVPRA 546
>01_03_0223 +
13924231-13924510,13924670-13924893,13925482-13925735,
13926041-13926422,13926938-13927369
Length = 523
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = +2
Query: 29 GTVWKRRAPGDHPAHNPERDAYEALAACPHMRAVIPRYYRELEYGGERFIEL 184
G W+R HPA N ++ + ++ + +++ R+ +++ G +EL
Sbjct: 148 GEDWERHRKVVHPAFNHDKLKFMSVVMAESVESMVQRWQSQIQQAGNNQVEL 199
>05_05_0026 + 21645845-21647404
Length = 519
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 23 GPGTVWKRRAPGDHPAHNPERDAYEALAACPHMRA-VIPRYYRELEYGGERFIELQDLLH 199
G G +++R+ A +P A+ A +R +IP YG ER ++LQD+
Sbjct: 138 GDGWLFQRKLAAAELA-SPAIRAFAANVVASELRCRLIPLLRSASSYGSERLLDLQDVFR 196
Query: 200 GF 205
F
Sbjct: 197 RF 198
>12_01_0160 -
1212295-1213586,1213828-1213976,1214288-1214445,
1214860-1215004,1215102-1215226
Length = 622
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 11 LAPAGPGTVWKRRAPGDHPAHNPERDAYE 97
L P P T KRR+ D P+ N E A+E
Sbjct: 289 LEPLEPETKLKRRSNRDKPSFNQEASAFE 317
>11_01_0161 -
1327286-1328592,1328819-1329000,1329279-1329436,
1329852-1329996,1330083-1330207
Length = 638
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 11 LAPAGPGTVWKRRAPGDHPAHNPERDAYE 97
L P P T KRR+ D P+ N E A+E
Sbjct: 300 LEPLEPETKLKRRSNRDKPSFNQEASAFE 328
>03_01_0341 +
2689367-2689619,2690520-2690782,2690865-2691033,
2691129-2691218,2691658-2691950,2692037-2692261
Length = 430
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 83 RDAYEALAACPHMRAVIPRYYRELEYGGERFIELQDLLHGFRDPHVNGCYDG 238
R+ E L H+ V R++ LE+GGE+ I ++ + +G H++ C +G
Sbjct: 184 RNEIETLQCIEHLNLV--RFHGYLEFGGEQLIIVEYVPNGNLREHLD-CVNG 232
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +2
Query: 2 PGSLAP-AGPGTVWKRRAPGDHPAHNPERDAYEALAACPHMRAVIPR 139
PG+ P A P RRAP H P D + A H A I R
Sbjct: 137 PGAREPTARPNAAANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKR 183
>08_01_0070 + 490655-493165
Length = 836
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 155 EYGGERFIELQDLLHGFRDPHVNGCYDGHTDI 250
E GER + + + HG H++G DGH+ +
Sbjct: 556 EERGERILVFEFMPHGALHDHLHGRVDGHSPL 587
>07_03_1345 + 25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 178 DKSFSSIFQFTIVARNNCTHMRTSG*SFIRITFRIMSWMIPRSA 47
+ S S+IFQ ++ R C H SF+ F +SW + S+
Sbjct: 898 EPSSSAIFQ--VLLRETCIHEEELFLSFLNRLFNTLSWTMTESS 939
>05_07_0066 +
27453611-27453627,27454729-27454872,27455998-27456690,
27457700-27458111,27458220-27458297,27458938-27458953,
27459038-27459192
Length = 504
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 2 PGSLAPAGPGTVWKRRAPGDHPAHNPERD 88
P + APA P + APG PA ERD
Sbjct: 126 PPAPAPAPPSSSSAAAAPGRSPARERERD 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,778,097
Number of Sequences: 37544
Number of extensions: 208631
Number of successful extensions: 587
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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