Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D23
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    29   0.30 
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   8.6  
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    25   8.6  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   8.6  

>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 183 WRHNLIKRFWNTIEVARQRSFAASHNGMSVCSCRSRHSLCAGSPP 49
           W   L +   N   ++ +R    SH+ + +C CRSR     G PP
Sbjct: 295 WLSKLRQNGTNASSLSHRRKLLTSHSTLKICFCRSR-----GDPP 334


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 94  YRHSIMRRGERPLPCHLYCIPE 159
           YRHS +    + L C+  CIPE
Sbjct: 344 YRHSDIHHCGQSLGCNCECIPE 365


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = -2

Query: 405 LI*VNNNYISQ*DVPST*FTRT*KYYKRKARDLTIS*DY**RCPETTLNALAH 247
           ++ VNNNY+ + D+P      +  Y    AR+++++        + T+  +AH
Sbjct: 165 MVIVNNNYLREVDMPYLESVESKFYVSYNAREISVTLPRLKTVGDMTIQRVAH 217


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 221 TDARHVYVW-CASAFSVVSGH 280
           T +RHVYVW  AS +SV   H
Sbjct: 132 TSSRHVYVWKHASKYSVPELH 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,853
Number of Sequences: 5004
Number of extensions: 35138
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)