Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D23
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0156 - 1364856-1365401                                           28   5.0  
04_01_0143 + 1659380-1659535,1659641-1659917,1660372-1660453,166...    27   6.5  
11_06_0301 + 22119619-22120221                                         27   8.7  

>01_01_0156 - 1364856-1365401
          Length = 181

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 95  YAAAAPGTLCARAPRPGCGSRATCGRAVAP 6
           Y  A PG  C   P   C +  TC R++ P
Sbjct: 103 YWGADPGPFCTPRPWGDCCTNTTCTRSIPP 132


>04_01_0143 +
           1659380-1659535,1659641-1659917,1660372-1660453,
           1660562-1660688,1660785-1660876,1661023-1661311,
           1662130-1662141
          Length = 344

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 352 IHSYLEILQKEGTRSNYKLGLLVKMPRNYAKCTRTPNINVARISQNVAFRSSLP--ALMA 179
           IH  L+I Q E  RS+YKLG    + + + K  R   +  A    N+   S++P  A   
Sbjct: 157 IHINLDIPQVEQFRSSYKLG-SPSLQQQHPKIVRLSPLQAAGKIYNLEEISAMPVSAFQG 215

Query: 178 S*SYKAI 158
             +Y A+
Sbjct: 216 GVTYSAV 222


>11_06_0301 + 22119619-22120221
          Length = 200

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 101 CRYAAAAPGTLCARAPRPGCGSRATCG 21
           C  A   PG   AR P P CG R   G
Sbjct: 127 CELAVGGPGAF-ARYPNPDCGERLDTG 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,962,637
Number of Sequences: 37544
Number of extensions: 256994
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)