Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_D23
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81032-3|CAB02720.1| 204|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.6
U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 28 3.4
AF099001-4|AAC68733.1| 215|Caenorhabditis elegans Hypothetical ... 27 5.9
AC024807-3|AAK84614.1| 252|Caenorhabditis elegans Hypothetical ... 27 5.9
Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr... 27 7.8
U28732-6|AAB04903.2| 489|Caenorhabditis elegans Hypothetical pr... 27 7.8
U28732-5|AAT92075.1| 495|Caenorhabditis elegans Hypothetical pr... 27 7.8
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 150 TIEVARQRSFAASHNGMSVCSCRSRHSLCAGSPPG 46
T V RQ + AA G C C ++ S C PPG
Sbjct: 73 TGRVRRQYATAAVSGGGGGCQCAAQASGCPAGPPG 107
>Z81032-3|CAB02720.1| 204|Caenorhabditis elegans Hypothetical
protein C02F4.4 protein.
Length = 204
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 295 GLLVKMPRNYAKCTRTPNINVARISQNVAFRSSLP 191
G + +P+N K T + + + NVAFRSSLP
Sbjct: 166 GQINSIPKNAKKATSSSAVVETEKNVNVAFRSSLP 200
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 150 TIEVARQRSFAASHNGMSVCSCRSRHSLCAGSPPG 46
T V RQ + AA G C C ++ S C PPG
Sbjct: 73 TGRVRRQYATAAVSGGGGGCQCAAQASGCPAGPPG 107
>U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical
protein D1044.8 protein.
Length = 981
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 97 RHSIMRRGERPLPCHLYCIPE--SLYKIMTPSTP 192
R+ M GE P P + C+P Y +M PS P
Sbjct: 787 RNHSMSAGETPRPSSIVCLPRITDKYSVMFPSAP 820
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -2
Query: 198 HYRR*WRHNLIKRFWN--TIEVARQRSFAASHNGMSVCSCRSRHSLCAGSPPG 46
+Y WR ++ T ++RQ +A G C+C S+ + C PPG
Sbjct: 48 YYDDAWRTMMVNEGMKGLTARISRQAGYATG--GSQQCNCGSQAAGCPAGPPG 98
>AF099001-4|AAC68733.1| 215|Caenorhabditis elegans Hypothetical
protein R160.6 protein.
Length = 215
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 156 WNTIEVARQRSFAASHNGMSVCSC 85
WNTI+V + A MS+CSC
Sbjct: 112 WNTIKVGKNGQHRAVQIPMSLCSC 135
>AC024807-3|AAK84614.1| 252|Caenorhabditis elegans Hypothetical
protein Y53G8AL.3 protein.
Length = 252
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 123 FAASHNGMSVCSCRSRHSLCAGSPPGLRFKSYL 25
FAAS C S ++C SPP L SYL
Sbjct: 66 FAASKECGVRGECESARAVCVSSPPPLSHHSYL 98
>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical
protein C14C10.4 protein.
Length = 1058
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 445 TSRLHDQSSTRYTLNLG***LHITMRRPFNMIHSYLEILQKEGTRSNYKLGLLV 284
T++LH + Y LN+ + FN++ SYL + + T + KL L V
Sbjct: 300 TAKLHSLENNAYVLNVFMDLIENGQFDAFNLLSSYLIVAESGSTLGDNKLNLPV 353
>U28732-6|AAB04903.2| 489|Caenorhabditis elegans Hypothetical
protein F45E1.7a protein.
Length = 489
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 355 MIHSYLEILQKEGTRSNYKLGLLVKMPRNYAKCTRTPNIN 236
M H + +KE RS + +G++ K R+YA R ++
Sbjct: 218 MAHVFKMCQEKEMDRSQFLIGIVQKTQRHYANIIRNSQMS 257
>U28732-5|AAT92075.1| 495|Caenorhabditis elegans Hypothetical
protein F45E1.7b protein.
Length = 495
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 355 MIHSYLEILQKEGTRSNYKLGLLVKMPRNYAKCTRTPNIN 236
M H + +KE RS + +G++ K R+YA R ++
Sbjct: 224 MAHVFKMCQEKEMDRSQFLIGIVQKTQRHYANIIRNSQMS 263
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,787,860
Number of Sequences: 27780
Number of extensions: 208532
Number of successful extensions: 500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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