Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D19
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    25   4.6  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   6.1  

>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 317 LLYAPIFIKISETSL--ILNVDDSDYYLKKIYVAGFVPMLSISS 442
           + Y PIF+KI + SL  + N D S+  L +  + G+  + S SS
Sbjct: 280 ICYPPIFVKIVDVSLKILFNWDLSNISLNQ-KLCGYAHLYSFSS 322


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 165 SSYVTYR*ASNFILR*CYVLISI*YIFLMYLFMFIM*KHRLFSHYINN 308
           SSY+      NF +R   ++ S   +FL+ ++ F++ +    S  INN
Sbjct: 145 SSYLVMTTWFNFSVRSTLIISSFLPLFLLIMYFFVLPESESTSPSINN 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,311
Number of Sequences: 5004
Number of extensions: 28469
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)