Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D19
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    28   4.1  
Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical p...    27   9.5  

>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 284 VIFALYK*PRALLYAPIFIKISETSLILNVDDSDYYLKKIYVAGFV 421
           VI ALY      L  P F+     S+ L+ +D+  Y+KK+Y  G++
Sbjct: 133 VINALYV---LCLIFPFFVCAGANSISLSREDALIYIKKVYPKGYL 175


>Z74031-10|CAA98450.1|  399|Caenorhabditis elegans Hypothetical
           protein F32D8.10 protein.
          Length = 399

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 335 FIKISETSLILNVDDSDYYLKKIYVAGFVPMLSISSTG 448
           +I +    +++N   S  +LK I+V   +PML++S  G
Sbjct: 97  YIAVMSVRILVNFTSS-VFLKSIWVHYMIPMLTVSHIG 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,254,916
Number of Sequences: 27780
Number of extensions: 153691
Number of successful extensions: 234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)