Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D19
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    30   0.015
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.43 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   3.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.2  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 29.9 bits (64), Expect = 0.015
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 207 LI*NSTPTCKSHMTIYD*NYVTKIIKYAKLCHNMAVNRT 91
           L+ N+ P C   +  +D    +K++K  ++ HN+AVN T
Sbjct: 148 LVNNNQPMCSPKLLTFDLK-TSKLVKQVEIPHNIAVNAT 185


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 207 LI*NSTPTCKSHMTIYD*NYVTKIIKYAKLCHNMAVN 97
           LI N    C   +  +D N  +K++K  ++ HN+AVN
Sbjct: 146 LINNIQLMCSPKLLAFDLN-TSKLLKQIEIPHNIAVN 181


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 338 IKISETSLILNVDDSDYYLKKIYVAGFVPMLSI 436
           + +SE S   N+ D   YL+K+    ++P+  I
Sbjct: 1   MNVSEYSFYGNISDELRYLEKVRGPKYLPLTLI 33


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = +3

Query: 33  KYIGRRQICLKCMKC 77
           KY+   Q C  C  C
Sbjct: 598 KYVAGEQCCWHCFNC 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,483
Number of Sequences: 438
Number of extensions: 2132
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)