Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D18
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   0.96 
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   2.2  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.9  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    25   6.7  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   6.7  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    25   6.7  

>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 0.96
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 59  WCGTTHGSYATANNYSN 9
           +CGT +GSY TA N  N
Sbjct: 520 YCGTLNGSYCTAKNLCN 536


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 183 LSVVSFWDSPVSGSDCALPLATPLCYGCVKS 275
           L+ V F+ +P+S S+    L    CY C KS
Sbjct: 44  LATVGFYYNPISESNSEERLDNVTCYMCTKS 74


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 235 RAQSEPETGESQKDTTESNFLYIRTATCKH 146
           RA SE E  E QK+  E  +  +R    KH
Sbjct: 171 RANSETEQYEKQKEALEEEYEELRNECLKH 200


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 222 NLKLVNPKKTQQKAISYTSEPPPANILNK 136
           ++K   P K Q+KA+      PP N++ +
Sbjct: 131 SMKFQKPSKIQEKALPLLLSNPPRNMIGQ 159


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 179 FPIHQNRHLQTF 144
           FP+HQ RHL TF
Sbjct: 203 FPVHQIRHLFTF 214


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 266 CKIIVNYVLVQSILYSITSVNLLDLNKIKNY 358
           CKI    +L  S+ Y  T+VNL +LN+   Y
Sbjct: 59  CKISAMPILNGSMSYVYTNVNLENLNRNITY 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,396
Number of Sequences: 5004
Number of extensions: 35861
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)