Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D18
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1259 - 27382639-27384284,27386570-27386612                       31   0.31 
10_01_0120 - 1480288-1481160                                           31   0.53 
02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619     29   2.2  
07_03_0811 - 21688781-21689830                                         27   5.0  
03_02_0501 - 8920458-8920646,8920918-8921024,8921136-8921352,892...    27   6.6  
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059...    27   8.7  
03_01_0275 + 2121758-2122693                                           27   8.7  
01_05_0491 - 22680011-22680125,22680210-22680307,22680392-226804...    27   8.7  

>12_02_1259 - 27382639-27384284,27386570-27386612
          Length = 562

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +2

Query: 32  RSCREWYHTR*GNCGVTSNIITQLKSKWHL--CNLASLLRMFAGGGSDV*EI-AFCC-VF 199
           RSCR     R G  G T+N++  L + +H+     A+LL +F+G  +    + AF C  +
Sbjct: 12  RSCRNETCERLGTIGTTANLLVYLTTVFHIPSAAAATLLNVFSGTSNLAPLLGAFLCDAY 71

Query: 200 LGFTSFRFGLRPSPSYASVLRM 265
           LG    R+    + S AS L M
Sbjct: 72  LG----RYATLAAASIASFLGM 89


>10_01_0120 - 1480288-1481160
          Length = 290

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 311 SITSVNLLDLNKIKNYFIYNALFKCNYNTY 400
           S TS N   +NK+K++FI     KC+Y+ Y
Sbjct: 254 SATSENPFSVNKLKSFFIVYHSTKCDYHIY 283


>02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619
          Length = 398

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 192 VSFWDSPVSGSDCALPLATPLCYGCVK 272
           +S    P S   CA+ LA PLC G VK
Sbjct: 117 LSLNSQPASKQQCAMELACPLCRGDVK 143


>07_03_0811 - 21688781-21689830
          Length = 349

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 159 PPANILNKLAKLHKCHLDFS*VMIFEVTPQFPHLVWYHSR 40
           PP+ +  KL +LH  H+ F+  +  E     P L W   R
Sbjct: 244 PPSGVFAKLRELHLVHVQFNGELTME-DAMLPSLEWLEIR 282


>03_02_0501 -
           8920458-8920646,8920918-8921024,8921136-8921352,
           8921744-8922157
          Length = 308

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 95  TQLKSKWHLCNLASLLRMFAGGGSDV 172
           T L+S +HLC LA  L   +G GS V
Sbjct: 164 TNLESAYHLCQLAHPLLKSSGSGSVV 189


>03_05_1024 +
           29802831-29804208,29804710-29804759,29805569-29805954,
           29807753-29807813,29807921-29807941
          Length = 631

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -3

Query: 222 NLKLVNPKKTQQKAISYTSEPPPANILNKLAKLHKCHLDF 103
           +L L+NP++ QQ+    ++ PPP++  + + + H+    F
Sbjct: 234 HLFLMNPQQQQQQQSRSSTSPPPSDAQSAIHQHHEAFQAF 273


>03_01_0275 + 2121758-2122693
          Length = 311

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 70 VSSPGVVPLTAATPLP 23
          VSSPG +PL   TP+P
Sbjct: 23 VSSPGAIPLLRHTPIP 38


>01_05_0491 -
           22680011-22680125,22680210-22680307,22680392-22680472,
           22680564-22680677,22680757-22680823,22680947-22681017,
           22681099-22681236,22681324-22681530,22681630-22681773,
           22681856-22682017,22682117-22682173,22682256-22682348,
           22682425-22682542,22682678-22682817,22683031-22683590,
           22683703-22683805
          Length = 755

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 159 AVLMYRKLLSVVSFWDSPVSGSDCALPLATPLCYGCVKS*LIMYWYNQSCTLLLV 323
           A L+YR L+   SF +   +  D  +   +        +  + YW + SCTLLL+
Sbjct: 378 AYLIYRCLIHWKSFEEDRTTVFDRIIQKISAAIEARDNNETLAYWLSNSCTLLLL 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,409,483
Number of Sequences: 37544
Number of extensions: 221124
Number of successful extensions: 546
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)