Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D17
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    30   0.22 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   0.91 
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    27   2.1  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    26   3.7  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   4.8  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   6.4  

>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 114 IFYLCSLKLIQTGKKYLSMLLERQKFPLTCSCCQIGCVDHEG 239
           IF + +L+L++ G++       R+  P + SCC  G   H G
Sbjct: 154 IFMMMALELVRRGQREFDRWCVRRFSPASNSCCHSGAPVHSG 195


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 301 TITSPFPFCSTTVTIYTSIPFPS*STQPI 215
           T +SP P  ST+ T  TSIP    ST P+
Sbjct: 327 TSSSPLPSTSTSCTTSTSIPPTGNSTTPV 355



 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 301 TITSPFPFCSTTVTIYTSIPFPS*STQPI 215
           T +SP P  ST+ T  TSIP    ST P+
Sbjct: 273 TNSSPLPTTSTSCTTSTSIPPTGNSTTPV 301


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 2   HEAFIHNHIYSPLHKCH 52
           H A  H  +Y+PLHK H
Sbjct: 170 HRALHHRWLYAPLHKLH 186


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -3

Query: 187 FCLSRSIDKYFLPV*INFKEQR*KINLYLQILIP*KVQEDKLQDKVTFMKW 35
           +CLS+ I    + + IN +  R +    L  L+P  + ++K++ K+    W
Sbjct: 273 YCLSQYILMKGIGIGINIRHTRCEFTKQLTQLLPTSLPKNKIRQKLHLRAW 323


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 9   HLYTITFILHFINVTLSCSLSSWTF 83
           +LY+I  +L   +  L C LS+W++
Sbjct: 140 YLYSILILLFLSHCVLRCCLSNWSW 164


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/61 (22%), Positives = 22/61 (36%)
 Frame = +3

Query: 261 VTVVEQKGNGEVMVTYHERMNAFLDYDCAXXXXXXXXXXXNEFLTDIFRVITDNNNHVKH 440
           VT  E     E  ++YH R+  ++D DC              F+ +      D    + H
Sbjct: 495 VTFEEVDLEFEKHISYHNRLLIYVDDDCEASTRTVIPTSVKNFIAEDNEYFDDELAGIIH 554

Query: 441 S 443
           S
Sbjct: 555 S 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,745,578
Number of Sequences: 5004
Number of extensions: 31232
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)