Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D17
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-24|AAK26151.1|  502|Caenorhabditis elegans Hypothetical...    29   1.4  
AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical ...    28   3.3  

>AC090999-24|AAK26151.1|  502|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.1 protein.
          Length = 502

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = -2

Query: 494 YS*KYNAVSIQYTKMINTMFHMIIVVCDYSKDVR*KLIDL-----SFNFYT 357
           Y  KYN + I Y  +    FH +I   DY K +  K+ D+      FNFYT
Sbjct: 308 YLIKYNILEITYCSL---EFHKLIQSSDYHKKLSRKIFDIIDDICYFNFYT 355


>AF100307-8|AAC68937.2|  250|Caenorhabditis elegans Hypothetical
           protein T12B5.13 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 204 SCCQIGCVDHEGNGIDV*MVTVVEQKGNGEVMVTY 308
           +CC IGC   + N I++  V   +  G  E  + Y
Sbjct: 196 NCCDIGCEKSKSNSIEIANVFKPDYAGGNEFSIKY 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,600,466
Number of Sequences: 27780
Number of extensions: 175847
Number of successful extensions: 389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)