Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D15
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    44   6e-06
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    27   1.3  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   2.2  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   5.1  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    24   9.0  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    24   9.0  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 44.4 bits (100), Expect = 6e-06
 Identities = 18/42 (42%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = +2

Query: 254 KESKDPFDSMPKGSFNMDDFKRFYSNEE-EAKSIPYFWEKFD 376
           K  K P  S P GSF+++++KR YSN++  + ++P+F+E FD
Sbjct: 249 KPPKHPLASAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFD 290


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 102 RQSTGHYNTDTGLMTHRLVPIPAARGS 22
           RQ T   ++DT  MTH + P P+  GS
Sbjct: 151 RQLTTENSSDTSSMTHPVQPSPSVLGS 177


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 264 KTRLTRCQRGLSIWMTSSVSILTKRRRNRFLTSG 365
           K  +   +RG+SI    +VS +   RRNR L  G
Sbjct: 150 KLTVVNAERGISIHKDKNVSDIFIMRRNRLLCCG 183


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 266 DPFDSMPKGSFNM-DDFKRFYSNEEEAKSIPYFWEKF 373
           +P  S P  S  + D  +  Y ++++ +    FWEKF
Sbjct: 32  EPLKSTPINSLELLDIIQAVYDDQKKGEESFVFWEKF 68


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 337 LFVRIETLEVIHIERPLWHRVK 272
           L++ ++T+E  H    LW R+K
Sbjct: 60  LYLYMKTIERAHFPSKLWQRIK 81


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 123 GSKTGGARQSTGHYNTDTGLMTHR 52
           GSK GG R+  G  + D+G +  R
Sbjct: 93  GSKRGGRRERGGRVHGDSGRLRSR 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,249,913
Number of Sequences: 5004
Number of extensions: 17793
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)