Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_D15
(376 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical p... 64 3e-11
Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical pr... 64 3e-11
Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical pr... 64 3e-11
Z11505-3|CAA77584.2| 468|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr... 27 3.3
AF153275-1|AAD54940.1| 301|Caenorhabditis elegans transcription... 27 3.3
AF003145-2|AAB57715.2| 301|Caenorhabditis elegans Runt related ... 27 3.3
AB027412-1|BAA77765.1| 301|Caenorhabditis elegans RNT-1 protein. 27 3.3
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 27 5.8
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr... 26 7.6
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 26 7.6
>Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical
protein F17C11.9c protein.
Length = 365
Score = 64.1 bits (149), Expect = 3e-11
Identities = 27/42 (64%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 KESKDPFDSMPKGSFNMDDFKRFYSNEEEA-KSIPYFWEKFD 376
++SKDPF MPKG+F +D+FKR YSNE+ A K+IP+FWE FD
Sbjct: 204 EKSKDPFQDMPKGTFVLDNFKRSYSNEDTATKAIPHFWENFD 245
>Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical
protein F17C11.9b protein.
Length = 373
Score = 64.1 bits (149), Expect = 3e-11
Identities = 27/42 (64%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 KESKDPFDSMPKGSFNMDDFKRFYSNEEEA-KSIPYFWEKFD 376
++SKDPF MPKG+F +D+FKR YSNE+ A K+IP+FWE FD
Sbjct: 212 EKSKDPFQDMPKGTFVLDNFKRSYSNEDTATKAIPHFWENFD 253
>Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical
protein F17C11.9a protein.
Length = 398
Score = 64.1 bits (149), Expect = 3e-11
Identities = 27/42 (64%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Frame = +2
Query: 254 KESKDPFDSMPKGSFNMDDFKRFYSNEEEA-KSIPYFWEKFD 376
++SKDPF MPKG+F +D+FKR YSNE+ A K+IP+FWE FD
Sbjct: 237 EKSKDPFQDMPKGTFVLDNFKRSYSNEDTATKAIPHFWENFD 278
>Z11505-3|CAA77584.2| 468|Caenorhabditis elegans Hypothetical
protein F59B2.5 protein.
Length = 468
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 240 LMRNPRSPKTRLTRCQRGLSIWMTSSVSILTKRRRNRFLTSGRSL 374
++R+P SP+TR RGLS S KR + L+ R L
Sbjct: 49 MVRSPGSPRTRDAHKNRGLSAQTAKSSEAEVKRCEDLILSYSRQL 93
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 281 MPKGSFNMDDFKRFYSNE-EEAKSI 352
+ GS N+D + RFYS+E +E KS+
Sbjct: 60 LSNGSLNLDSYDRFYSSERKEWKSV 84
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 281 MPKGSFNMDDFKRFYSNE-EEAKSI 352
+ GS N+D + RFYS+E +E KS+
Sbjct: 60 LSNGSLNLDSYDRFYSSERKEWKSV 84
>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
protein D2005.5 protein.
Length = 1119
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 272 FDSMPKGSFNMDDFKRFYSNEEEAKSIPYFWEKFD 376
++ +P G + FK + +EEE + P+ ++K D
Sbjct: 154 WEDLPDGWLTAETFKNKFYDEEEVTNNPFGYQKLD 188
>AF153275-1|AAD54940.1| 301|Caenorhabditis elegans transcription
factor RUN protein.
Length = 301
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 243 MRNPRSPKTRLTRCQRGLSIWMTSSVSILTKRRRNRFLTSGRS 371
++ P SP++ + +++ + S+ +KRRRN +TS S
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNS 292
>AF003145-2|AAB57715.2| 301|Caenorhabditis elegans Runt related
protein 1 protein.
Length = 301
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 243 MRNPRSPKTRLTRCQRGLSIWMTSSVSILTKRRRNRFLTSGRS 371
++ P SP++ + +++ + S+ +KRRRN +TS S
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNS 292
>AB027412-1|BAA77765.1| 301|Caenorhabditis elegans RNT-1 protein.
Length = 301
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 243 MRNPRSPKTRLTRCQRGLSIWMTSSVSILTKRRRNRFLTSGRS 371
++ P SP++ + +++ + S+ +KRRRN +TS S
Sbjct: 250 LKRPSSPRSITKSSETSINLIQETPESVESKRRRNVSITSSNS 292
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 26.6 bits (56), Expect = 5.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 109 RSEAEHRSLQH*HWADDPPPRADSCSPGIHSL 14
+++A+H QH H PPP + + PG++ L
Sbjct: 751 QAQAQH---QHQHMMGQPPPSSQNAQPGMNLL 779
>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
protein F46F11.9b protein.
Length = 1282
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 331 VRIETLEVIHIERPLWHRV 275
V +ET++ I+ ERPLW+ +
Sbjct: 627 VEMETVKAIYGERPLWNEI 645
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 331 VRIETLEVIHIERPLWHRV 275
V +ET++ I+ ERPLW+ +
Sbjct: 625 VEMETVKAIYGERPLWNEI 643
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,137,306
Number of Sequences: 27780
Number of extensions: 110278
Number of successful extensions: 332
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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