Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D14
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    27   1.1  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    27   1.5  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   6.1  

>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -2

Query: 479 DSFSHESTRGCHT----GLVWDSRREAPLTTTH*TPRYLPPPSWSK 354
           +SF   ++ G +     G  W   RE    T +   + +PPP+W+K
Sbjct: 200 ESFDSSNSLGLYNMTTNGTAWPEDRERYKKTKYNASQIVPPPNWAK 245


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 400 LPTKLPGTSLHLVGANTGSDYAFTANTYLHPTKVFNFLVR-TWIYRVFLSAF 248
           L ++    SL    + TG    F A++YL  T  FNF VR T I   FL  F
Sbjct: 120 LSSRYHSVSLPCWSSGTGLAGLFGASSYLVMTTWFNFSVRSTLIISSFLPLF 171


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 476 SFSHESTRGCHTGLVWDSRREAPLT 402
           S+    ++ CHT L+W +R E+ L+
Sbjct: 24  SWRLSESKACHTTLIWRNRCESVLS 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,683
Number of Sequences: 5004
Number of extensions: 39345
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)