Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D14
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0116 + 16189250-16189411,16189577-16190104                       28   3.5  
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51...    27   6.1  
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469...    27   8.1  

>01_04_0116 + 16189250-16189411,16189577-16190104
          Length = 229

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 428 DSRREAPLTTTH*TPRYLPPPSWSKHGIGLCIH 330
           +S +  PL  +H  P + PPP     G  LC H
Sbjct: 10  ESSQPPPLVVSHRLPSFSPPPLPPVSGTALCRH 42


>07_01_0070 +
           515247-515397,516198-516265,516360-518456,518750-518900,
           519883-520638,520990-521164,521303-521387
          Length = 1160

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 467 HESTRGCHTGLVWDSRREAPLTTTH*TPRYLPP 369
           H    GC TG++    R  PL   H   R LPP
Sbjct: 18  HRQQAGCVTGILQAFDRRYPLAAHHSHNRLLPP 50


>01_06_1031 -
           33945681-33945822,33946502-33946641,33946748-33946995,
           33947355-33947576,33948188-33948839
          Length = 467

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 381 VPPST*LEQTRDRTMHSPRIHICTLQKYLTSLYVP 277
           +PP + L+  RD TM+ PR  I   Q +  SLY P
Sbjct: 423 LPPDSILQAIRDETMYDPRERIEMAQGH--SLYRP 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,429,830
Number of Sequences: 37544
Number of extensions: 249554
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)