Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D14
         (489 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M63180-1|AAB04939.1|  712|Homo sapiens threonyl-tRNA synthetase ...    29   8.6  
BC088355-1|AAH88355.1|  682|Homo sapiens TARS protein protein.         29   8.6  
BC010578-1|AAH10578.2|  723|Homo sapiens threonyl-tRNA synthetas...    29   8.6  
BC000517-1|AAH00517.2|  723|Homo sapiens threonyl-tRNA synthetas...    29   8.6  
AK222804-1|BAD96524.1|  723|Homo sapiens threonyl-tRNA synthetas...    29   8.6  

>M63180-1|AAB04939.1|  712|Homo sapiens threonyl-tRNA synthetase
           protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 279 PGSTVYSCQPLVNSLRGSVVEMG*KDKVLQLFKIS 175
           P +TVY C PL++  RG  V    K K L++ K S
Sbjct: 235 PTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNS 269


>BC088355-1|AAH88355.1|  682|Homo sapiens TARS protein protein.
          Length = 682

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 279 PGSTVYSCQPLVNSLRGSVVEMG*KDKVLQLFKIS 175
           P +TVY C PL++  RG  V    K K L++ K S
Sbjct: 247 PTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNS 281


>BC010578-1|AAH10578.2|  723|Homo sapiens threonyl-tRNA synthetase
           protein.
          Length = 723

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 279 PGSTVYSCQPLVNSLRGSVVEMG*KDKVLQLFKIS 175
           P +TVY C PL++  RG  V    K K L++ K S
Sbjct: 247 PTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNS 281


>BC000517-1|AAH00517.2|  723|Homo sapiens threonyl-tRNA synthetase
           protein.
          Length = 723

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 279 PGSTVYSCQPLVNSLRGSVVEMG*KDKVLQLFKIS 175
           P +TVY C PL++  RG  V    K K L++ K S
Sbjct: 247 PTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNS 281


>AK222804-1|BAD96524.1|  723|Homo sapiens threonyl-tRNA synthetase
           variant protein.
          Length = 723

 Score = 29.1 bits (62), Expect = 8.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 279 PGSTVYSCQPLVNSLRGSVVEMG*KDKVLQLFKIS 175
           P +TVY C PL++  RG  V    K K L++ K S
Sbjct: 247 PTTTVYRCGPLIDLCRGPHVRHTGKIKALKIHKNS 281


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,439,409
Number of Sequences: 237096
Number of extensions: 1431676
Number of successful extensions: 2585
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2585
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)