Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D14
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical pr...    30   0.78 
Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical pr...    30   0.78 
AF067214-9|AAC17004.1|  286|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z69902-6|CAD89723.1|  684|Caenorhabditis elegans Hypothetical
           protein C47D12.6b protein.
          Length = 684

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -1

Query: 363 LEQTRDRTMHSPRIHICTLQKYLTSLYVPGSTVYSCQPLVNSLRGSVVEMG*KDKVLQLF 184
           LE T++  +   + +   ++     ++ P +TVY C PL++  RG  V    K K + + 
Sbjct: 177 LEMTKEDLLEMFKYNEFKVRIITEKIHTPKTTVYRCGPLIDLCRGPHVRHTGKVKAMAIT 236

Query: 183 KIS 175
           K S
Sbjct: 237 KNS 239


>Z69902-5|CAA93762.1|  725|Caenorhabditis elegans Hypothetical
           protein C47D12.6a protein.
          Length = 725

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -1

Query: 363 LEQTRDRTMHSPRIHICTLQKYLTSLYVPGSTVYSCQPLVNSLRGSVVEMG*KDKVLQLF 184
           LE T++  +   + +   ++     ++ P +TVY C PL++  RG  V    K K + + 
Sbjct: 218 LEMTKEDLLEMFKYNEFKVRIITEKIHTPKTTVYRCGPLIDLCRGPHVRHTGKVKAMAIT 277

Query: 183 KIS 175
           K S
Sbjct: 278 KNS 280


>AF067214-9|AAC17004.1|  286|Caenorhabditis elegans Hypothetical
           protein F56C3.1 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 417 RSAVDHYPLNSPVPPST*LEQTRDRTMHSPRIHICTLQKY 298
           +S+V    + SP+PP   + Q R   M  P+ H CT   Y
Sbjct: 239 QSSVGTSEVMSPMPPKNTMAQGRRWDMSYPKYHACTKDCY 278


>Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical
           protein T04H1.8 protein.
          Length = 524

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = -2

Query: 191 NYLKYPYPS*NSLTIIEAILSS*SVLRNFFSLSYFTYFRKNYNTLRF*IIPLLCSTK 21
           N+ K+P  + +  T++  I SS +++   F   +  +FRKNY   ++   PL  STK
Sbjct: 472 NFSKFP-KNYHPNTLVRLIDSSIALVFMLFIFVFVNHFRKNYVGFKY---PLSFSTK 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,901,624
Number of Sequences: 27780
Number of extensions: 221222
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)