Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D14
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   3.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   5.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   5.3  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 389 TPRYLPPPSWSKHGIGLC 336
           +P+  P P+W  H +G C
Sbjct: 225 SPKLRPYPNWEWHTVGNC 242


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 389 TPRYLPPPSWSKHGIGLC 336
           +P+  P P+W+++  G C
Sbjct: 106 SPKLTPYPNWAQNKAGAC 123


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 310 PTKVFNFLVRTWIYRVFLSAFSKQSSWL 227
           PT+  NF  +    +VFL    K + +L
Sbjct: 85  PTQALNFAFKDKYKQVFLGGVDKNTQFL 112


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 310 PTKVFNFLVRTWIYRVFLSAFSKQSSWL 227
           PT+  NF  +    +VFL    K + +L
Sbjct: 85  PTQALNFAFKDKYKQVFLGGVDKNTQFL 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,410
Number of Sequences: 438
Number of extensions: 3143
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)