Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D13
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0038 + 7612866-7613132,7615691-7616608                           28   4.3  
02_01_0005 + 34436-34498,34578-35120,35566-35643,35823-35915,360...    28   4.3  
11_01_0172 - 1383568-1384440,1385336-1385401,1385470-1385505,138...    27   9.9  

>05_03_0038 + 7612866-7613132,7615691-7616608
          Length = 394

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = +1

Query: 85  LRFQQRETKEEVEV*NLLKITNDPRCSSG*SGTVQRPTAPEGRRVALDPEPSGDHHVRRG 264
           L+F+   T  ++ +  LLK           S + Q P APE        EPS    + R 
Sbjct: 255 LQFRHDVTHSQLHL-RLLKAPRSSATRDVPSSSTQPPPAPERPASVARREPSPLFRILRS 313

Query: 265 IYGRASRNQHKDRSI 309
           ++G  S    K+R +
Sbjct: 314 LFGLCSAEAKKNRRL 328


>02_01_0005 +
           34436-34498,34578-35120,35566-35643,35823-35915,
           36086-36181,36709-36762,36856-37059,37209-37360,
           37365-37440,38185-38193,38577-38708,39042-39107,
           39885-40184,40332-40640,40976-40996
          Length = 731

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 23/70 (32%), Positives = 28/70 (40%)
 Frame = -1

Query: 233 SGSRATLRPSGAVGRCTVPLHPLLHRGSFVILRRFQTSTSSFVSRCWNRRTS*TAGLLAS 54
           SGS   L+P  AV    VP+   L   S      F        SR +  RT  T GL  +
Sbjct: 535 SGSMEVLKPCWAVATSGVPVREQLFNVSICHYNNFNLFHHGDFSRSFG-RTFDTTGLEVA 593

Query: 53  EGSIYQRIDG 24
              + QR DG
Sbjct: 594 TPILLQRDDG 603


>11_01_0172 -
           1383568-1384440,1385336-1385401,1385470-1385505,
           1385604-1385743,1386978-1387134,1387245-1387418,
           1387540-1387790,1390296-1390446
          Length = 615

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/48 (27%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
 Frame = +2

Query: 176 VEQCNDQLHLRDGELLSILNRLATIMSDEEYMAELL--EINTKIVQLS 313
           ++QC +QL   +   ++++N+L   +S++E  +ELL  +++  ++ LS
Sbjct: 263 LKQCIEQLESVNMARITLINKLREALSEQEAKSELLRNQLHNHMLDLS 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,012,447
Number of Sequences: 37544
Number of extensions: 257403
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)