Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_D13
(548 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK222485-1|BAD96205.1| 424|Homo sapiens proteasome 26S ATPase s... 31 2.7
CR457338-1|CAG33619.1| 410|Homo sapiens SIGIRR protein. 31 3.5
BC106007-1|AAI06008.1| 410|Homo sapiens SIGIRR protein protein. 31 3.5
BC025953-1|AAH25953.1| 410|Homo sapiens SIGIRR protein protein. 31 3.5
BC003591-1|AAH03591.1| 410|Homo sapiens single immunoglobulin a... 31 3.5
AK172830-1|BAD18795.1| 410|Homo sapiens protein ( Homo sapiens ... 31 3.5
AK025099-1|BAB15066.1| 410|Homo sapiens protein ( Homo sapiens ... 31 3.5
CR456731-1|CAG33012.1| 404|Homo sapiens PSMC3 protein. 30 4.6
BC107804-1|AAI07805.1| 491|Homo sapiens PSMC3 protein protein. 30 4.6
BC106920-1|AAI06921.1| 439|Homo sapiens proteasome (prosome, ma... 30 4.6
BC073165-1|AAH73165.3| 439|Homo sapiens proteasome (prosome, ma... 30 4.6
BC008713-1|AAH08713.4| 439|Homo sapiens proteasome (prosome, ma... 30 4.6
M34079-1|AAA36666.1| 404|Homo sapiens protein ( Human immunodef... 29 8.1
>AK222485-1|BAD96205.1| 424|Homo sapiens proteasome 26S ATPase
subunit 3 variant protein.
Length = 424
Score = 31.1 bits (67), Expect = 2.7
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +2
Query: 86 FDSNNGKQRKKLKFETFLKLQTIPDVVVDEVEQCNDQLHLRDGELLSI------LNRLAT 247
F + N + R ++ K+ PDV +E+ +C D + + + + L R AT
Sbjct: 339 FPTPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGAT 398
Query: 248 IMSDEEYMAELLEINTK 298
++ E+YM +LE+ K
Sbjct: 399 ELTHEDYMEGILEVQAK 415
>CR457338-1|CAG33619.1| 410|Homo sapiens SIGIRR protein.
Length = 410
Score = 30.7 bits (66), Expect = 3.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 184 VQRPTAPEGRRV--ALDPEPSGDHHVRRGIYGRASRNQH 294
+ R PEGR + +DP+P GD VR ++G S H
Sbjct: 333 ILRGRVPEGRALDSEVDPDPEGDLGVRGPVFGEPSAPPH 371
>BC106007-1|AAI06008.1| 410|Homo sapiens SIGIRR protein protein.
Length = 410
Score = 30.7 bits (66), Expect = 3.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 184 VQRPTAPEGRRV--ALDPEPSGDHHVRRGIYGRASRNQH 294
+ R PEGR + +DP+P GD VR ++G S H
Sbjct: 333 ILRGRVPEGRALDSEVDPDPEGDLGVRGPVFGEPSAPPH 371
>BC025953-1|AAH25953.1| 410|Homo sapiens SIGIRR protein protein.
Length = 410
Score = 30.7 bits (66), Expect = 3.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 184 VQRPTAPEGRRV--ALDPEPSGDHHVRRGIYGRASRNQH 294
+ R PEGR + +DP+P GD VR ++G S H
Sbjct: 333 ILRGRVPEGRALDSEVDPDPEGDLGVRGPVFGEPSAPPH 371
>BC003591-1|AAH03591.1| 410|Homo sapiens single immunoglobulin and
toll-interleukin 1 receptor (TIR) domain protein.
Length = 410
Score = 30.7 bits (66), Expect = 3.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 184 VQRPTAPEGRRV--ALDPEPSGDHHVRRGIYGRASRNQH 294
+ R PEGR + +DP+P GD VR ++G S H
Sbjct: 333 ILRGRVPEGRALDSEVDPDPEGDLGVRGPVFGEPSAPPH 371
>AK172830-1|BAD18795.1| 410|Homo sapiens protein ( Homo sapiens
cDNA FLJ23991 fis, clone HRC08504, highly similar to
Homo sapiens single Ig IL-1R-related molecule (SIGIRR).
).
Length = 410
Score = 30.7 bits (66), Expect = 3.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 184 VQRPTAPEGRRV--ALDPEPSGDHHVRRGIYGRASRNQH 294
+ R PEGR + +DP+P GD VR ++G S H
Sbjct: 333 ILRGRVPEGRALDSEVDPDPEGDLGVRGPVFGEPSAPPH 371
>AK025099-1|BAB15066.1| 410|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21446 fis, clone COL04458. ).
Length = 410
Score = 30.7 bits (66), Expect = 3.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 184 VQRPTAPEGRRV--ALDPEPSGDHHVRRGIYGRASRNQH 294
+ R PEGR + +DP+P GD VR ++G S H
Sbjct: 333 ILRGRVPEGRALDSEVDPDPEGDLGVRGPVFGEPSAPPH 371
>CR456731-1|CAG33012.1| 404|Homo sapiens PSMC3 protein.
Length = 404
Score = 30.3 bits (65), Expect = 4.6
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +2
Query: 86 FDSNNGKQRKKLKFETFLKLQTIPDVVVDEVEQCNDQLHLRDGELLSI------LNRLAT 247
F N + R ++ K+ PDV +E+ +C D + + + + L R AT
Sbjct: 319 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGAT 378
Query: 248 IMSDEEYMAELLEINTK 298
++ E+YM +LE+ K
Sbjct: 379 ELTHEDYMEGILEVQAK 395
>BC107804-1|AAI07805.1| 491|Homo sapiens PSMC3 protein protein.
Length = 491
Score = 30.3 bits (65), Expect = 4.6
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +2
Query: 86 FDSNNGKQRKKLKFETFLKLQTIPDVVVDEVEQCNDQLHLRDGELLSI------LNRLAT 247
F N + R ++ K+ PDV +E+ +C D + + + + L R AT
Sbjct: 406 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGAT 465
Query: 248 IMSDEEYMAELLEINTK 298
++ E+YM +LE+ K
Sbjct: 466 ELTHEDYMEGILEVQAK 482
>BC106920-1|AAI06921.1| 439|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 3 protein.
Length = 439
Score = 30.3 bits (65), Expect = 4.6
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +2
Query: 86 FDSNNGKQRKKLKFETFLKLQTIPDVVVDEVEQCNDQLHLRDGELLSI------LNRLAT 247
F N + R ++ K+ PDV +E+ +C D + + + + L R AT
Sbjct: 354 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGAT 413
Query: 248 IMSDEEYMAELLEINTK 298
++ E+YM +LE+ K
Sbjct: 414 ELTHEDYMEGILEVQAK 430
>BC073165-1|AAH73165.3| 439|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 3 protein.
Length = 439
Score = 30.3 bits (65), Expect = 4.6
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +2
Query: 86 FDSNNGKQRKKLKFETFLKLQTIPDVVVDEVEQCNDQLHLRDGELLSI------LNRLAT 247
F N + R ++ K+ PDV +E+ +C D + + + + L R AT
Sbjct: 354 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGAT 413
Query: 248 IMSDEEYMAELLEINTK 298
++ E+YM +LE+ K
Sbjct: 414 ELTHEDYMEGILEVQAK 430
>BC008713-1|AAH08713.4| 439|Homo sapiens proteasome (prosome,
macropain) 26S subunit, ATPase, 3 protein.
Length = 439
Score = 30.3 bits (65), Expect = 4.6
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +2
Query: 86 FDSNNGKQRKKLKFETFLKLQTIPDVVVDEVEQCNDQLHLRDGELLSI------LNRLAT 247
F N + R ++ K+ PDV +E+ +C D + + + + L R AT
Sbjct: 354 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGAT 413
Query: 248 IMSDEEYMAELLEINTK 298
++ E+YM +LE+ K
Sbjct: 414 ELTHEDYMEGILEVQAK 430
>M34079-1|AAA36666.1| 404|Homo sapiens protein ( Human
immunodeficiency virus tat transactivator binding
protein-1 (tbp-1) mRNA, complete cds. ).
Length = 404
Score = 29.5 bits (63), Expect = 8.1
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +2
Query: 86 FDSNNGKQRKKLKFETFLKLQTIPDVVVDEVEQCNDQLHLRDGELLSI------LNRLAT 247
F N + R ++ K+ PDV +E+ +C D + + + + L R AT
Sbjct: 319 FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALARGAT 378
Query: 248 IMSDEEYMAELLEINTK 298
++ E+YM +LE+ K
Sbjct: 379 ELTHEDYMEGILEVQAK 395
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,072,723
Number of Sequences: 237096
Number of extensions: 1404712
Number of successful extensions: 2697
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2690
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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