Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D13
         (548 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2997|AAF57480.2|  523|Drosophila melanogaster CG13868-P...    60   1e-09
U57758-1|AAB49932.1|  360|Drosophila melanogaster putative thyro...    28   7.2  
AY069836-1|AAL39981.1|  444|Drosophila melanogaster SD08021p pro...    28   7.2  
AF129079-1|AAD28604.1|  444|Drosophila melanogaster COP9 signalo...    28   7.2  
AE014134-1594|AAF52736.1|  444|Drosophila melanogaster CG9556-PB...    28   7.2  
AE014134-1593|AAN10685.1|  444|Drosophila melanogaster CG9556-PA...    28   7.2  

>AE013599-2997|AAF57480.2|  523|Drosophila melanogaster CG13868-PA
           protein.
          Length = 523

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
 Frame = +2

Query: 8   ARDPKGRLSAGIYFPLKLKDQQ--FTMFFDS-NNGKQRKKLKFETF-LKLQTIPDVVVDE 175
           +RD KG++ AGIYFPL    Q+   T+F+D  N  + R KL F  F +    +PD V   
Sbjct: 415 SRDAKGQVYAGIYFPLVANGQEAYLTIFYDGPNEQRVRTKLMFSAFKVGKGKLPDYVGQH 474

Query: 176 VEQCNDQLHLRDGELLSILNRLATIMSDEEYMAELLEINTKIVQLS 313
           + +   QL +   EL  +   LA +++D+ +++++L IN  I  +S
Sbjct: 475 LSRLAPQLKIPLPELTELCKSLAEVVTDQSFISQVLAINDDIGNMS 520


>U57758-1|AAB49932.1|  360|Drosophila melanogaster putative thyroid
           receptor interactingprotein protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 53  LKLKDQQFTMFFDSNNGKQRKKLKFETFLKLQTIPD-VVVDEVEQCNDQLHLRDGE 217
           L++   +  M+    N K+ K L  ++      IP  +++  + +C  ++HLR+GE
Sbjct: 196 LEIYALEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGE 251


>AY069836-1|AAL39981.1|  444|Drosophila melanogaster SD08021p
           protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 53  LKLKDQQFTMFFDSNNGKQRKKLKFETFLKLQTIPD-VVVDEVEQCNDQLHLRDGE 217
           L++   +  M+    N K+ K L  ++      IP  +++  + +C  ++HLR+GE
Sbjct: 196 LEIYALEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGE 251


>AF129079-1|AAD28604.1|  444|Drosophila melanogaster COP9
           signalosome subunit 2 CSN2 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 53  LKLKDQQFTMFFDSNNGKQRKKLKFETFLKLQTIPD-VVVDEVEQCNDQLHLRDGE 217
           L++   +  M+    N K+ K L  ++      IP  +++  + +C  ++HLR+GE
Sbjct: 196 LEIYALEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGE 251


>AE014134-1594|AAF52736.1|  444|Drosophila melanogaster CG9556-PB,
           isoform B protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 53  LKLKDQQFTMFFDSNNGKQRKKLKFETFLKLQTIPD-VVVDEVEQCNDQLHLRDGE 217
           L++   +  M+    N K+ K L  ++      IP  +++  + +C  ++HLR+GE
Sbjct: 196 LEIYALEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGE 251


>AE014134-1593|AAN10685.1|  444|Drosophila melanogaster CG9556-PA,
           isoform A protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 53  LKLKDQQFTMFFDSNNGKQRKKLKFETFLKLQTIPD-VVVDEVEQCNDQLHLRDGE 217
           L++   +  M+    N K+ K L  ++      IP  +++  + +C  ++HLR+GE
Sbjct: 196 LEIYALEIQMYTVQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGE 251


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,923,713
Number of Sequences: 53049
Number of extensions: 437185
Number of successful extensions: 1090
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)