Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D12
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    25   4.9  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   8.5  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   8.5  

>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 484 AALVNATSQYFLLYNSILKYWE 419
           A  V+    Y LLY+S+ K+W+
Sbjct: 181 AVSVHCVQTYALLYSSLAKFWD 202


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 346 VYIKQKNVLKNLPQHLINYHRLPTFPNILKSNCIKG 453
           +Y   + ++  L  H    H L  FPN+L  +C +G
Sbjct: 203 IYCWNRFLITELDNHFSEAHILEKFPNLL-LHCFRG 237


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 451 LLYNSILKYWEKSGDDGNLLSAVVSSLAHFFV*YIRNTK 335
           LLY  I+ Y +K+ DD   +   ++    F + +   +K
Sbjct: 91  LLYTQIVPYLQKNNDDAPTIRCALNCTQEFLLSFSNESK 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,597
Number of Sequences: 5004
Number of extensions: 36374
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)