Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D12
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0846 - 21983581-21986055                                         33   0.17 
01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845     32   0.23 
08_02_0817 + 21516306-21516584,21517515-21517601,21517705-215178...    32   0.30 
07_03_0740 - 21102015-21102287,21102402-21102555,21102647-211028...    27   6.5  
12_01_0680 + 5797152-5797481,5797816-5798331,5798868-5798944,580...    27   8.6  
07_03_1515 - 27348999-27349559,27349738-27350070,27350461-273505...    27   8.6  
01_07_0259 - 42353992-42354111,42354255-42354385,42355484-423555...    27   8.6  

>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 472 NATSQYFLLYNSILKYWEKSGDDGNLLSAVVSSLAHF 362
           N T+QYF+ +N  + YW     +GN+ S V    A +
Sbjct: 196 NGTTQYFIQWNDSITYWTSGPWNGNIFSLVPEMTAGY 232


>01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845
          Length = 767

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 472 NATSQYFLLYNSILKYWEKSGDDGNLLSAV 383
           N TSQY L +NS L+YW      G + + V
Sbjct: 209 NGTSQYLLQWNSTLQYWTSGNWTGRIFTGV 238


>08_02_0817 +
           21516306-21516584,21517515-21517601,21517705-21517848,
           21517937-21518029,21518156-21518407
          Length = 284

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 484 AALVNATSQYFLLY-NSILKYWEKSGDDGNLLSAVVSSL 371
           AALVN     + +Y N +L    K+GDDGN  + V S L
Sbjct: 128 AALVNVNDAIWSMYFNELLPLLAKNGDDGNYAATVSSDL 166


>07_03_0740 -
           21102015-21102287,21102402-21102555,21102647-21102884,
           21103008-21103218,21103303-21103442,21103537-21103665,
           21104120-21104960
          Length = 661

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 490 LIAALVNATSQYFLLYNSILKYWEKSGDDGNLLSAVVS 377
           L+AALVNAT+ Y   YNS  +Y     D    L  V S
Sbjct: 162 LVAALVNATADY-AAYNSTRRYAAGEADFDAALPKVYS 198


>12_01_0680 +
           5797152-5797481,5797816-5798331,5798868-5798944,
           5800706-5800778,5801689-5801786,5801868-5801964,
           5802451-5802516,5802717-5802764,5803223-5803297,
           5803913-5803970,5804553-5804611,5805098-5805160,
           5805161-5805205,5805490-5805588,5805713-5805760,
           5805884-5805931,5806008-5806064
          Length = 618

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 360 KKCAKELTTALNKLPSSPDFSQYFKIELYKRKYCEVALTRAAIKILWN 503
           K CAK L    N   +S   + +  I  +KRKY ++A  R     LW+
Sbjct: 47  KACAKALNDHFNINLTSDQITNH--IRTWKRKYSKIADLRKLSAALWD 92


>07_03_1515 -
           27348999-27349559,27349738-27350070,27350461-27350574,
           27350911-27351141,27351231-27351686
          Length = 564

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 360 KKCAKELTTALNKLPSSPDFSQYFKIELYKRKYCEVALTRAAIKILWN 503
           K CAK L    N   +S   + +  I  +KRKY ++A  R     LW+
Sbjct: 315 KACAKALNDHFNINLTSDQINNH--IRTWKRKYSKIADLRKLSAALWD 360


>01_07_0259 -
           42353992-42354111,42354255-42354385,42355484-42355571,
           42356439-42357282,42357354-42357934,42358962-42359159
          Length = 653

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 487 IAALVNATSQYFLLYNSILKYWEKSGDDGNL 395
           +A L      YFLL  +  KY    GDDGN+
Sbjct: 503 LAVLAAVNLGYFLLCATTYKYNNYGGDDGNV 533


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,349,517
Number of Sequences: 37544
Number of extensions: 188940
Number of successful extensions: 388
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)