Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D12
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.6  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 207 KYDYNNKRTY 178
           KY+YNNK  Y
Sbjct: 97  KYNYNNKYNY 106


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 340 YYVYIKQKNVLKNLPQHLINYHRLPTFPNILKSNC 444
           +  Y KQ+     L  H  N+   PT   ILK  C
Sbjct: 232 FQTYKKQRYPWVQLAGHQGNFRAGPTPGTILKKLC 266


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 340 YYVYIKQKNVLKNLPQHLINYHRLPTFPNILKSNC 444
           +  Y KQ+     L  H  N+   PT   ILK  C
Sbjct: 147 FQTYKKQRYPWVQLAGHQGNFRAGPTPGTILKKLC 181


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 340 YYVYIKQKNVLKNLPQHLINYHRLPTFPNILKSNC 444
           +  Y KQ+     L  H  N+   PT   ILK  C
Sbjct: 466 FQTYKKQRYPWVQLAGHQGNFRAGPTPGTILKKLC 500


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 31  HRVAALNYGSPGCRIRHEAR 90
           H+   L Y    CR RHE R
Sbjct: 510 HQWGILVYEPSACRPRHEIR 529


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = +3

Query: 390 LNKLPSSPDFSQY 428
           +NKLP++P+++ +
Sbjct: 77  MNKLPTTPEYNNH 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,387
Number of Sequences: 438
Number of extensions: 2638
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)