Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D11
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   1.7  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    23   6.7  
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ...    23   8.8  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    23   8.8  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    23   8.8  

>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 185 KTLTKRCAQVALRVQPCCTPSRLFV 259
           K +T RC  V L    CC  +RL +
Sbjct: 36  KVITARCISVLLASSVCCILTRLII 60


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1066

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 104  LVCFASVGYFVVFF 63
            LVCF +  YF VFF
Sbjct: 986  LVCFVAPSYFDVFF 999


>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 141

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 193 DKEMCTGGITGAAVLYTKPALRGVSKPSPQ 282
           D  + +G +TGA +LY+   +R     SP+
Sbjct: 57  DPRLISGRMTGALILYSSVFMRYAWMVSPR 86


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 119  WNAVNLVCFASVGYFVVFFYGYL 51
            W A+ + C   +  F   FYG L
Sbjct: 1129 WQAIRVECIGDLIIFCTAFYGIL 1151


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 257 RRAGLVYSTAAPVMPPVHI 201
           R+  L Y    PV+PPV I
Sbjct: 224 RQGSLFYDFIPPVLPPVEI 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,138,038
Number of Sequences: 5004
Number of extensions: 18242
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)