Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_D11
(289 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0092 - 1311892-1312055,1312490-1312574,1312628-1312936,131... 28 1.1
10_01_0212 - 2278447-2279580 27 1.8
04_01_0542 - 7005972-7007443,7008568-7008766,7008780-7008855,700... 27 1.8
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754... 26 4.2
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 26 4.2
05_01_0527 - 4541922-4541987,4543996-4544130,4544674-4544941,454... 26 4.2
12_01_0527 - 4177928-4178235,4178849-4181438 25 7.4
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690... 25 7.4
03_04_0067 - 17013606-17013614,17013912-17013998,17014126-170147... 25 9.8
>09_01_0092 -
1311892-1312055,1312490-1312574,1312628-1312936,
1314155-1314229,1314363-1314438,1315594-1315679,
1315958-1316203,1316399-1316614
Length = 418
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 254 RAGLVYSTAAPVMPPVHISLSEF*IKTPSS 165
R G+ P PP HISL +F +K P +
Sbjct: 363 RPGVKTGQVFPAHPPDHISLGQFRVKNPGT 392
>10_01_0212 - 2278447-2279580
Length = 377
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 120 GYLIYHN*INYRELDRRWCFYLKL*QRDVHRWH-YGC 227
GY + + ++ +L R CF L+L + + +WH YGC
Sbjct: 81 GYPFFRSVLDPPDLIPRECFRLRLAEDEGGQWHFYGC 117
>04_01_0542 -
7005972-7007443,7008568-7008766,7008780-7008855,
7009615-7009925
Length = 685
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 243 GVQHGCTRNATCAHLFVRVLNKNTIFCPVLDN 148
GV HG R A +F RV + N + C + ++
Sbjct: 163 GVSHGLWRAALPQRIFFRVTDCNAVICDICED 194
>10_08_0259 +
16274430-16274747,16275180-16275242,16275329-16275424,
16275526-16275618,16276415-16276605,16276684-16276921,
16277805-16277900,16278324-16278404,16278532-16278939,
16279048-16279331,16279460-16279547,16279630-16279830,
16280032-16280118,16280119-16280238,16280536-16280708,
16281914-16282055,16282292-16282414,16282601-16282656,
16282735-16283038,16283154-16283283,16283491-16283549,
16283829-16284061,16285480-16285527,16285765-16285843,
16285925-16286169,16286338-16286722
Length = 1446
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 149 LSRTGQKMVFLFKTLTKRCAQVALRVQPCCTPSRLFVVFRSRVLNW 286
L +T Q + FL+ + RC Q+ LR TP + ++ + W
Sbjct: 783 LGKTFQVITFLYTVM--RCIQLGLRTALIVTPVNVLHNWKKEFIKW 826
>09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -3
Query: 230 AAPVMPPVHISLSEF*IKTPSSVQFSIIYLIMIY*I---PWNAVNLVCFASVGYFVVFFY 60
AA + P+ +L + I+ P + S+IY +++Y + W A + YF + +Y
Sbjct: 1158 AAHMYSPLPYALGQVAIELPYILVQSLIYGVLVYAMIGFEWTAAKFFWYLFFMYFTLSYY 1217
Query: 59 GY 54
+
Sbjct: 1218 TF 1219
>05_01_0527 -
4541922-4541987,4543996-4544130,4544674-4544941,
4545429-4545751,4546096-4546212,4546309-4546422,
4546613-4546786,4546848-4546999,4547133-4547298,
4547387-4547525,4547622-4547814,4548084-4548166,
4548250-4548365,4548878-4548947,4549151-4549272
Length = 745
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -3
Query: 158 FSIIYLIMIY*IPWNAVNLVCFASVGYFVVFFYGYLL 48
F ++YL++++ + W V + F + +F++ Y+L
Sbjct: 614 FQLVYLLIVWGMTWIPVAGILFPLLFFFLIVIRQYIL 650
>12_01_0527 - 4177928-4178235,4178849-4181438
Length = 965
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 234 HGCTRNATCAHLFVRVLNKNTIFCPVLDNLSNYDILNTLERGES 103
HGCT+ L R ++ ++ P + ++ Y I++TL+ S
Sbjct: 807 HGCTQPVLLLDLSTRTVHLKSMNEPQIGDVELYKIVDTLKSSGS 850
>11_05_0050 +
18665251-18665613,18667280-18667744,18668548-18669037,
18669115-18669143
Length = 448
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 195 QRDVHRWHYGCSRAVHQAGSSWCFEAE 275
+R++ RW Y C S WC EA+
Sbjct: 107 ERELGRWAYVCPATPKCKYSVWCGEAD 133
>03_04_0067 -
17013606-17013614,17013912-17013998,17014126-17014746,
17015037-17015174,17015891-17016013,17016127-17016204
Length = 351
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 225 CSRAVHQAGSSWCFEAE 275
CS AV G WCF+ +
Sbjct: 31 CSTAVDCGGGQWCFDCQ 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,641,192
Number of Sequences: 37544
Number of extensions: 120189
Number of successful extensions: 318
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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