Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D11
         (289 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97592-3|AAB52869.1|  304|Caenorhabditis elegans Hypothetical pr...    26   5.0  
AL021497-7|CAA16398.1|  144|Caenorhabditis elegans Hypothetical ...    26   5.0  
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z78200-8|CAB01583.2|  368|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>U97592-3|AAB52869.1|  304|Caenorhabditis elegans Hypothetical
           protein C14A11.2 protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 261 TTKSRLGVQHGCTRNATCAHLFVRVLNKNTIFCP 160
           T+KS L V H  T N   A   +R  N + + CP
Sbjct: 158 TSKSALEVSHVKTCNTNTAKRRLRFTNVHALICP 191


>AL021497-7|CAA16398.1|  144|Caenorhabditis elegans Hypothetical
           protein Y51A2D.11 protein.
          Length = 144

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = -2

Query: 261 TTKSRLGVQHGCTRNATCAHLFVRVLNKNTIFCPVLDNLSNYDI 130
           T   ++ + H C  N  C+      + KN +      N  NYDI
Sbjct: 83  TIDPKVNIYHKCNYNGLCSKKVSINIPKNAVVSGSGQNARNYDI 126


>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
           protein C49C3.4 protein.
          Length = 1566

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 248 GLVYSTAAPVMPPVHISLSEF*IKTPS 168
           G+V++ AAP   P+ +++S   ++ PS
Sbjct: 366 GIVFTNAAPASGPLDLAISTTYVENPS 392


>Z78200-8|CAB01583.2|  368|Caenorhabditis elegans Hypothetical
           protein T04H1.6 protein.
          Length = 368

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 231 GCTRNATCAHLFVRVLNKNTIFCPVLD 151
           GC++N TC   FV   ++  + C  LD
Sbjct: 284 GCSKNTTCIGKFVCGTSRGGVSCVDLD 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,386,899
Number of Sequences: 27780
Number of extensions: 103702
Number of successful extensions: 247
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)