Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D09
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733...    29   2.2  
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023     29   3.0  
04_04_0340 + 24517562-24520318                                         28   3.9  
02_03_0344 + 17967687-17968309,17968402-17968744,17970285-179704...    28   5.2  
02_02_0648 - 12619468-12619874,12621432-12621512,12621607-126217...    28   5.2  
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373...    27   6.8  

>05_05_0348 +
           24271764-24271898,24273055-24273144,24273205-24273303,
           24273725-24273826,24273912-24274088,24274193-24274398,
           24274491-24274575,24274641-24274798,24274873-24274948,
           24275117-24275245,24275313-24275457,24275561-24275691,
           24276183-24276335,24276447-24276636,24277006-24277139,
           24277248-24277406,24277659-24277964,24278040-24278216,
           24278446-24278529,24278592-24278822,24278913-24279002,
           24279090-24279211,24279293-24279448,24279477-24279635,
           24279705-24279765,24280004-24280138,24280384-24280471,
           24280548-24280620,24280883-24280994,24281691-24281711
          Length = 1327

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +2

Query: 305 AAREMASTENQMESADENLKKMQLISVHIGYQYENIHKSAQVLSEIKEQIMAMQK 469
           A  E+ + +NQMES  E +K      + +  + E  H  A    +++++ +  ++
Sbjct: 515 ARAELTAAQNQMESIKEQIKAKDTYIMELQEKIEKHHSEANEARKVEQECLKQEE 569


>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
          Length = 620

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 301 KSCT*DGIHRESN--GECR*KLKENATNIC 384
           + C  DG H E    GEC  K KEN T+ C
Sbjct: 15  EDCAIDGSHDEKTCTGECTRKKKENRTSCC 44


>04_04_0340 + 24517562-24520318
          Length = 918

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 293 LLIKAAREMASTENQMESADEN-LKKMQLISVHIGYQYENIHKSAQVLSEIKEQIMAMQK 469
           LLI+AA+  A  E   + +  N   + +   +H G    N H     +  IK+Q + + K
Sbjct: 547 LLIEAAKSKAFVELSSDGSSRNDFTRTRRACLHAGKILTNFHPDVLTIYNIKQQYVELNK 606


>02_03_0344 +
           17967687-17968309,17968402-17968744,17970285-17970410,
           17970458-17970642,17970721-17970973
          Length = 509

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 1   RHEVSFRSYCKSEINNRIINYLLNSWSLVLADLTYY 108
           RH V   +  + E+ +R+   L+N+   ++ D TYY
Sbjct: 171 RHGVGGAARVRVELKSRLFELLMNTMMAMICDKTYY 206


>02_02_0648 -
           12619468-12619874,12621432-12621512,12621607-12621716,
           12621896-12622164,12622440-12622567,12622637-12622699,
           12623196-12623493
          Length = 451

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 239 NNITSLGRHIQRGSKSNELLIKAA---REMASTENQMESADENLKKM 370
           NNI +L RH   G+++ +L+I  A   +E AS+     S+D   K +
Sbjct: 305 NNIKTLSRHAILGAEAPDLVIATATTKQERASSRGDPRSSDYRCKAL 351


>11_01_0485 +
           3728686-3728863,3729933-3730095,3730508-3730549,
           3730833-3730927,3731273-3731334,3731416-3731507,
           3731587-3731722,3731818-3731904,3732430-3732519,
           3732969-3733071,3733616-3733716,3733837-3733971,
           3734006-3734093,3734484-3734544,3734626-3734689,
           3735219-3735347
          Length = 541

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 452 FAL*FQTTLELIYEYFHTGNQYEQILVAFSLSFHLH-SPFDSLWMPSHV 309
           F +  Q  +  + +  H GNQYE+ + +F++  + H +PF    + SH+
Sbjct: 381 FKMISQRHISSVPDTVHGGNQYEKDVGSFNMILYYHIAPFIPQIVVSHI 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,189,676
Number of Sequences: 37544
Number of extensions: 189035
Number of successful extensions: 429
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)