Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D09
         (520 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR prot...    24   3.5  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   3.5  

>AY391746-1|AAR28996.1|  502|Anopheles gambiae putative GPCR
           protein.
          Length = 502

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -2

Query: 381 DISCIFFKFSSA----LSI*FSVD-AISRAAFIRSSLDFDPLCMCRPNDVILFIFT 229
           +I C FF FSS+    LS+ F V   + R   +   L    +C  R   +++F  T
Sbjct: 189 EICCRFFTFSSSLCCFLSVWFVVAFTVERFIAVLYPLKRQTMCTVRRAKIVIFALT 244


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = +2

Query: 278 SKSNELLIKAAREMASTENQMESADENLKKMQLISVHIGYQYENIHKSAQVLSEIKEQI 454
           S+ NE L +  + +   +      +E  +    +S  +G   E IH+    L  ++EQ+
Sbjct: 436 SEKNEALKRQEKLIDHIKTSRLGLEEQKRIKAELSQDVGTSKERIHELQSELDNVREQL 494


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 472,088
Number of Sequences: 2352
Number of extensions: 8401
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47360208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)