Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D09
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p...    28   3.5  
U23511-4|AAC46793.1|  288|Caenorhabditis elegans Temporarily ass...    28   3.5  
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ...    28   3.5  
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ...    28   3.5  
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    27   6.1  
AL033514-36|CAH19095.1|  222|Caenorhabditis elegans Hypothetical...    27   8.0  

>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 519 SMHTINMHYFFLNMIYHFCIAIICSLI 439
           S+H    HYF    ++ + IA+I SLI
Sbjct: 176 SLHARRFHYFIAKFVFWYGIALIISLI 202


>U23511-4|AAC46793.1|  288|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 337 protein.
          Length = 288

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 454 NLLFDFRQHLS*FMNIFIL 398
           N LF+FR H+  F+N+FIL
Sbjct: 103 NKLFEFRDHIVRFLNMFIL 121


>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 519 SMHTINMHYFFLNMIYHFCIAIICSLI 439
           S+H    HYF    ++ + IA+I SLI
Sbjct: 176 SLHARRFHYFIAKFVFWYGIALIISLI 202


>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 519 SMHTINMHYFFLNMIYHFCIAIICSLI 439
           S+H    HYF    ++ + IA+I SLI
Sbjct: 176 SLHARRFHYFIAKFVFWYGIALIISLI 202


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
           protein Y39B6A.18 protein.
          Length = 1352

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
 Frame = +2

Query: 230 VNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESA-------DENLKKMQLISVH 388
           +  NNI SL + IQ   K  E   KA R + S +N + S        DENLKK+    ++
Sbjct: 446 IRSNNI-SLTK-IQESVKGIENQFKAVR-LDSLKNDVFSKISDVFRKDENLKKVITAEIN 502

Query: 389 IGYQYENIHKSAQVLSEIKEQIMAMQ 466
           +    +N+   + V+SE  + I  ++
Sbjct: 503 VNKCLQNLKNESLVISEALKTIQKLR 528


>AL033514-36|CAH19095.1|  222|Caenorhabditis elegans Hypothetical
           protein Y75B8A.39 protein.
          Length = 222

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +2

Query: 224 VQVNMNNITSLGRHIQRGSKSNELLIKAAREMASTENQMESADEN 358
           +Q   NN  ++ + ++ G   ++ LIK  + +A  EN+++   E+
Sbjct: 81  LQYYNNNKQAIEKMVEHGKSQDQNLIKRQKALADAENELKVKKEH 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,459,911
Number of Sequences: 27780
Number of extensions: 198729
Number of successful extensions: 531
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)