Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D08
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   1.2  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    26   2.9  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   2.9  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    25   6.7  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   6.7  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   6.7  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   6.7  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 160 NSSDDTMSFSSLFSVTGAAFINPIKN 83
           N S  T SFS  FS TG   + PI+N
Sbjct: 193 NESFQTPSFSGSFSQTGTYQLTPIRN 218


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 348 SLKNGVATKILETGTDASATNDDTSEVYF 434
           +LK GV    ++TG+ ASATN    E+ +
Sbjct: 254 TLKGGVVVTDVKTGSGASATNGKKVEMRY 282


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 181 YWTNSFMNSSDDTMSFSSLFSVTGAAF 101
           ++T  F+N+    +S S LFS+ GA F
Sbjct: 514 FFTTIFLNTYASMISSSDLFSILGAHF 540


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -3

Query: 190 LDEYWTNSFMNSSDDTMSFSS 128
           L E WTNS  N SDD   FSS
Sbjct: 472 LAESWTNSAKN-SDDPSKFSS 491


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 148 DTMSFSSLFSVTGAAFINPIKNTTPKKSVSCILVSC*TPHIE*YV 14
           D +SF+ L  V     +N ++ + P+K +S  +V+   PH E YV
Sbjct: 15  DPLSFNELRYV-----VNLVRKSYPEKQISFDVVTLSEPHKEEYV 54


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 361 PFFNE*RPLYSFSPLSLTSASTKN 290
           PF N  +P+ + SP+++T++S  N
Sbjct: 679 PFVNNTKPIVAKSPVTVTASSETN 702


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 208 RLTMSYLDEYWTNSFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPK 71
           R + SY DE      + SSD +   SS FS   + +  P + T PK
Sbjct: 320 RRSRSYSDE--DEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPK 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,550,615
Number of Sequences: 5004
Number of extensions: 26799
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)