Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D08
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   3.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   3.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 354  KNGVATKILETGTDASATND-DTSEV 428
            KNG    ++   T  SA ND DT+ V
Sbjct: 980  KNGKPPSVVSRSTQTSANNDKDTNAV 1005


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 361 VWLPKF*KPAPMPQQLTMI 417
           +W+  F K  P+PQ L  I
Sbjct: 495 IWMIDFAKTLPLPQHLPRI 513


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 361 VWLPKF*KPAPMPQQLTMI 417
           +W+  F K  P+PQ L  I
Sbjct: 410 IWMIDFAKTLPLPQHLPRI 428


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 361 VWLPKF*KPAPMPQQLTMI 417
           +W+  F K  P+PQ L  I
Sbjct: 729 IWMIDFAKTLPLPQHLPRI 747


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 114 LVPLLSIRLKTRHLRSL*AASWYLVKLRT 28
           L+ L ++ L T  +  L A  W L ++RT
Sbjct: 450 LIVLTALGLPTNDISLLFAVDWMLDRIRT 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,653
Number of Sequences: 438
Number of extensions: 1628
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)