Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D07
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    31   0.100
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    25   6.6  

>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 30.7 bits (66), Expect = 0.100
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 200 HSIDRVVGCFI--PVYESLCNNYGNAGAMSQASLVTIAL 310
           H  + ++G  +  PV + L NN GN GA+   SL+ IAL
Sbjct: 309 HDFNAILGSSLGQPVAQVLVNNVGNKGALGIFSLLVIAL 347


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 431 HISRTHPQHNXHIPYHIVCRLLVPGRRLVVAERPPRLPSPAVL 303
           +IS THPQH     Y +V +L +   + V+ E+P  +  P  L
Sbjct: 86  YISSTHPQH-----YEVV-KLALLNDKAVLCEKPLTINYPEAL 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,322
Number of Sequences: 5004
Number of extensions: 36243
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)