Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D07
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81092-1|CAB03144.1|  143|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF078781-4|AAC26918.1|  255|Caenorhabditis elegans Hypothetical ...    27   4.4  
AF045646-5|AAK29828.1|  225|Caenorhabditis elegans Hypothetical ...    27   5.8  

>Z81092-1|CAB03144.1|  143|Caenorhabditis elegans Hypothetical
           protein F58D12.1 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 344 VAERPPRLPSPAVLWSPATPGSSHRRSHNCYIK 246
           +++RPPR PS +   SPA PGS+ +     Y++
Sbjct: 44  ISDRPPRPPSSSASSSPA-PGSARKPYFFLYVR 75


>Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical protein
            F42E11.1 protein.
          Length = 1266

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +2

Query: 173  SENM*KILLHSIDRVVGCFIPVYESLCNNYGNAGAMSQASLVTIALLVTAGAVVAQL--- 343
            S+N+   + H +  V+   + ++  +   +    +M+   L+T  LLV A + VAQ    
Sbjct: 815  SQNVQAAIDHRLAEVLNGVVSLFTGIAVAFWFGWSMAPIGLITALLLVIAQSAVAQYLKY 874

Query: 344  -RPGDAPAPINDTRCGTECV 400
              P D  + I  +R  TE +
Sbjct: 875  RGPKDMESAIEASRIVTESI 894


>AF078781-4|AAC26918.1|  255|Caenorhabditis elegans Hypothetical
           protein B0545.4 protein.
          Length = 255

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 122 APLRISTRYCGSRIRIYSYPIYGNCMRTRIRPHWK 18
           +P+R+ T+     +R+   PIY  C  T + P WK
Sbjct: 12  SPIRVRTQ----ALRLPDKPIYQGCFSTILDPRWK 42


>AF045646-5|AAK29828.1|  225|Caenorhabditis elegans Hypothetical
           protein F56B3.3 protein.
          Length = 225

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 344 VAERPPRLPSPAVLWSPATPGSSHRRSHNCYI 249
           +++RPPR PS +   SPA PGS+ +     YI
Sbjct: 44  ISDRPPRPPSLSASSSPA-PGSARKPYFFLYI 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,559,719
Number of Sequences: 27780
Number of extensions: 215500
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)