Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D06
         (167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    24   3.1  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    23   7.1  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    23   7.1  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 167 FIQYLSRYL*SCM*INEFTCLLQLLSDFLSDKLPICHRIH 48
           F+++  +YL +    NEF  LL+L S  + DK  +  R +
Sbjct: 517 FLEHARQYLANESKYNEFIKLLELYSQEVFDKNALVERCY 556


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 164 IQYLSRYL*SCM*INEFTCLLQLLSDFLSDK 72
           +++  RY+ SC  + +    + L  +F SDK
Sbjct: 183 VEWYFRYINSCWPLFDLENFMDLFDNFYSDK 213


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 6   HEGHVYSIQIY 38
           HEG+VYS+ +Y
Sbjct: 800 HEGNVYSVTLY 810


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,558
Number of Sequences: 5004
Number of extensions: 8041
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)