Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D06
         (167 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical pr...    28   0.77 
Z68493-7|CAA92793.1|  339|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z66495-1|CAA91268.2|  502|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U50072-4|AAA93451.1|  250|Caenorhabditis elegans Cytochrome p450...    25   9.5  

>U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical
           protein D1014.2 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = -1

Query: 116 FTCLLQLLSDFLSDKLPICHRIHRITIYLYTVYMTLVP 3
           F CLL  +  F+  K    ++  R  +Y++ +++ ++P
Sbjct: 198 FFCLLLTIVHFIHPKTRAANKYARYVVYIHMIFVVIIP 235


>Z68493-7|CAA92793.1|  339|Caenorhabditis elegans Hypothetical
           protein C33A12.10 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 125 INEFTCLLQLLSDFLSDKLP 66
           +++FTC L  L+DFL  +LP
Sbjct: 77  LSQFTCFLLFLTDFLMTRLP 96


>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 146 YL*SCM*INEFTCLLQLLSDFLSDKLP 66
           YL S + I++  CLL  L+DFL  +LP
Sbjct: 69  YLLSAISISQCMCLLFFLADFLYLRLP 95


>Z66495-1|CAA91268.2|  502|Caenorhabditis elegans Hypothetical
           protein C36A4.1 protein.
          Length = 502

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 91  DNNCRRQVNSLIYIQDHKYL 150
           D+NC+R  N + Y+   KY+
Sbjct: 200 DSNCQRDRNDVFYVNAKKYI 219


>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical
           protein C35A5.8 protein.
          Length = 1078

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 61  HIGNLSDKKSDNNCRRQV 114
           +IG+L+D+ S++NC  Q+
Sbjct: 234 YIGSLTDETSEDNCNVQI 251


>Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical
           protein C36A4.6 protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 91  DNNCRRQVNSLIYIQDHKYL 150
           D+NC+R    L Y+Q  K++
Sbjct: 200 DSNCQRDRTDLFYVQARKFV 219


>U50072-4|AAA93451.1|  250|Caenorhabditis elegans Cytochrome p450
           family protein 25A6 protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 91  DNNCRRQVNSLIYIQDHKYL 150
           D+NC+R  N + Y+   K++
Sbjct: 215 DSNCQRDRNDIFYVNARKFI 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,225
Number of Sequences: 27780
Number of extensions: 42682
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 12,740,198
effective HSP length: 36
effective length of database: 11,740,118
effective search space used: 223062242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)