Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D05
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   217   5e-58
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   217   5e-58
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    49   3e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    29   0.20 
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   5.7  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    24   7.6  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    24   7.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    24   7.6  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    24   10.0 
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    24   10.0 
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    24   10.0 
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    24   10.0 

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  217 bits (530), Expect = 5e-58
 Identities = 99/129 (76%), Positives = 113/129 (87%)
 Frame = +3

Query: 9   GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
           GKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQ
Sbjct: 2   GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQ 61

Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
           PNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFK 121

Query: 369 VVKVANVSL 395
           VVKVA V L
Sbjct: 122 VVKVAGVGL 130


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  217 bits (530), Expect = 5e-58
 Identities = 99/129 (76%), Positives = 113/129 (87%)
 Frame = +3

Query: 9   GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
           GKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQ
Sbjct: 2   GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQ 61

Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
           PNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFK 121

Query: 369 VVKVANVSL 395
           VVKVA V L
Sbjct: 122 VVKVAGVGL 130


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 48.8 bits (111), Expect = 3e-07
 Identities = 31/82 (37%), Positives = 49/82 (59%)
 Frame = +3

Query: 132 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 311
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 312 AGFGRKGHAVGDIPGVRFKVVK 377
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 391  DTFATLTTLNLTPGMSPTAWP 329
            DT+AT  TLN      PT WP
Sbjct: 1157 DTYATFQTLNYIQNQQPTKWP 1177


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 261 PRDGCLNHIEENDEVLVAGFGRKGHAVG 344
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 69  WADKEFKKAHMGTRWKANPFGGASHAKGIV 158
           W D EF   H   ++   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 6   RGKPRGIRTARKHVNHRREQRWADKEFKKA 95
           R KP     A+K VN +R++R A    KKA
Sbjct: 393 RAKPGENPLAKKKVNKKRKERAAQWRNKKA 422


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/55 (21%), Positives = 33/55 (60%)
 Frame = -1

Query: 388 TFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMS 224
           TF++++++  +   SP++  L  + ++ +S+FSS     PS  +++++    ++S
Sbjct: 572 TFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILS 626


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 173 ANFFEDDALSMRCTTEGVRLPSRT 102
           +++FE + + + CT  G R PS+T
Sbjct: 51  SSYFESEKIKIACTVSGPR-PSKT 73


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 75  DKEFKKAHMGTRWKANPFGGASHAKGIVLEKV 170
           D+EF+   +   +K  PF    HA  +V+  V
Sbjct: 143 DREFRIGRLKFNFKPGPFNVKEHALIVVMSSV 174


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 241 LPFLMSCTRTHLRMAEFGCLAST 173
           L  L+SC +T+   A FGC   T
Sbjct: 133 LSSLLSCMKTYRATALFGCSTDT 155


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 182 GFNANFFEDDALSMRCTTEGVRLPSR 105
           G + NFFE+D  S+R  ++ +   +R
Sbjct: 11  GLSLNFFEEDGPSLRLNSDSLDFLAR 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,064
Number of Sequences: 5004
Number of extensions: 35422
Number of successful extensions: 93
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)