Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_D05
(400 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 243 1e-64
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 243 1e-64
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 243 1e-64
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 99 5e-21
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 54 2e-07
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 54 2e-07
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 54 2e-07
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 54 2e-07
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 54 2e-07
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 54 2e-07
X72012-1|CAA50891.1| 625|Homo sapiens endoglin protein. 30 3.3
DQ866809-1|ABI75346.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 3.3
AL162586-6|CAI39765.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 3.3
AL157935-2|CAI12605.1| 625|Homo sapiens endoglin (Osler-Rendu-W... 30 3.3
AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein. 29 4.3
M14123-4|AAA88033.1| 1361|Homo sapiens protein ( Human endogenou... 28 9.9
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 28 9.9
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 28 9.9
AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein pro... 28 9.9
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 28 9.9
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 28 9.9
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 28 9.9
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 243 bits (595), Expect = 1e-64
Identities = 114/130 (87%), Positives = 122/130 (93%)
Frame = +3
Query: 9 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
PNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 369 VVKVANVSLL 398
VVKVANVSLL
Sbjct: 122 VVKVANVSLL 131
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 243 bits (595), Expect = 1e-64
Identities = 114/130 (87%), Positives = 122/130 (93%)
Frame = +3
Query: 9 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
PNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 369 VVKVANVSLL 398
VVKVANVSLL
Sbjct: 122 VVKVANVSLL 131
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 243 bits (595), Expect = 1e-64
Identities = 114/130 (87%), Positives = 122/130 (93%)
Frame = +3
Query: 9 GKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 188
GK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 189 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 368
PNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 369 VVKVANVSLL 398
VVKVANVSLL
Sbjct: 122 VVKVANVSLL 131
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 99.1 bits (236), Expect = 5e-21
Identities = 46/48 (95%), Positives = 46/48 (95%)
Frame = +3
Query: 255 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 398
FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 48
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 293
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 294 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 377
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 293
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 294 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 377
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 293
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 294 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 377
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 293
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 294 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 377
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 293
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 294 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 377
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 54.0 bits (124), Expect = 2e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 293
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 294 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 377
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>X72012-1|CAA50891.1| 625|Homo sapiens endoglin protein.
Length = 625
Score = 29.9 bits (64), Expect = 3.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 137 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 15
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>DQ866809-1|ABI75346.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 3.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 137 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 15
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AL162586-6|CAI39765.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 3.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 137 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 15
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AL157935-2|CAI12605.1| 625|Homo sapiens endoglin
(Osler-Rendu-Weber syndrome 1) protein.
Length = 625
Score = 29.9 bits (64), Expect = 3.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 137 CTTEGVRLPSRTHVGFFEFLVGPSLLATMIHVLARRANTPR 15
CT++G+ LP+ + F FL+G L A + ++ + PR
Sbjct: 582 CTSKGLVLPAVLGITFGAFLIGALLTAALWYIYSHTREYPR 622
>AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein.
Length = 727
Score = 29.5 bits (63), Expect = 4.3
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 1/108 (0%)
Frame = +3
Query: 6 RGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLE-KVGVEA 182
R P I R H N A++E KA +H L+ K V
Sbjct: 418 RNFPFYITHIRAHTNLPGPLTKANEEADLLVSSALIKAQELHALTHVNAAGLKNKFDVTW 477
Query: 183 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGR 326
KQ ++ C + Q++ + PR C N + + D V FGR
Sbjct: 478 KQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALWQMDVTHVPSFGR 525
>M14123-4|AAA88033.1| 1361|Homo sapiens protein ( Human endogenous
retrovirus HERV-K10. ).
Length = 1361
Score = 28.3 bits (60), Expect = 9.9
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 290
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 493 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 552
Query: 291 ENDEVLVAGFGR 326
+ D V FGR
Sbjct: 553 QMDVTHVPSFGR 564
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 9.9
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 290
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 591 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 650
Query: 291 ENDEVLVAGFGR 326
+ D V FGR
Sbjct: 651 QMDVTHVPSFGR 662
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 28.3 bits (60), Expect = 9.9
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 290
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 1514 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 1573
Query: 291 ENDEVLVAGFGR 326
+ D V FGR
Sbjct: 1574 QMDVTHVPSFGR 1585
>AF164613-1|AAD51796.1| 1755|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1755
Score = 28.3 bits (60), Expect = 9.9
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 290
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 1514 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 1573
Query: 291 ENDEVLVAGFGR 326
+ D V FGR
Sbjct: 1574 QMDVTHVPSFGR 1585
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 28.3 bits (60), Expect = 9.9
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 290
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 1514 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 1573
Query: 291 ENDEVLVAGFGR 326
+ D V FGR
Sbjct: 1574 QMDVTHVPSFGR 1585
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 9.9
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 290
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 591 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 650
Query: 291 ENDEVLVAGFGR 326
+ D V FGR
Sbjct: 651 QMDVTHVPSFGR 662
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 9.9
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 114 KANPFGGASHAKGIVLE-KVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIE 290
KA +H L+ K V KQ ++ C + Q++ + PR C N +
Sbjct: 591 KAQELHALTHVNAAGLKNKFDVTWKQAKDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALW 650
Query: 291 ENDEVLVAGFGR 326
+ D V FGR
Sbjct: 651 QMDVTHVPSFGR 662
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,651,470
Number of Sequences: 237096
Number of extensions: 1512775
Number of successful extensions: 3918
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3907
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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