Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D04
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    31   0.078
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    22   4.3  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.1  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   6.8  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   6.8  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    25   9.0  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 31.5 bits (68), Expect = 0.078
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = -3

Query: 286 IITPWTSVVMLVSS*FGVNSMFMLTLLFLRSTHSLAS 176
           II+ W+S+++++SS  G + ++   LLFLR    ++S
Sbjct: 466 IISLWSSLMIIISSSLGSDEIYKACLLFLRKLEDVSS 502


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 22.2 bits (45), Expect(2) = 4.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 294  PIPFPLADRDACKDKGLTCPLQPNVLANYTATLPVLKS 407
            P P  +  R     + +   L P   ANY+   P+LKS
Sbjct: 2327 PDPESVDSRFLQGSRSMKYALNPGEEANYSWDFPILKS 2364



 Score = 21.4 bits (43), Expect(2) = 4.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 399  LKSYPKVSVDVKWELKNENNVDIICILVPSR 491
            ++ +P+V VD    L   N +D+    +PSR
Sbjct: 2398 IRIHPEVKVDSLTSLVTFNEIDLSKPKLPSR 2428


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
 Frame = +3

Query: 114 YKDCGSQLATVQTVMV-TGCSQDAKE-CVLRRNSNVSMNIEFTPNQELTSITTDVHGVMM 287
           Y D  ++   + +VM  +G   + K+ C   R  N+ + ++ T    L+SI  DV  + +
Sbjct: 153 YVDEKTKAIGISSVMFHSGQLNNVKDICNKFRPENIHVLVDMTQQVGLSSI--DVQELNV 210

Query: 288 NMPIPFPLADRDACKDKGLTCPLQPNVLANYTATLPVLKSYPKV 419
           +       A   AC  KGL+CP    VL      LP LK+ P +
Sbjct: 211 S-------ACAFACH-KGLSCPTGLGVLYVAPDVLPQLKNVPPI 246


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 212 RQHEHRIHSESRAHQHNHRRPRGDDEHAH 298
           R++E R    SRAH +++   R DD+ +H
Sbjct: 189 RRYEERSSRSSRAHDYDYEDLR-DDDRSH 216


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +2

Query: 221 EHRIHSES---RAHQHNHRRPRGDD 286
           E+R +S S   R H   +RRPRGD+
Sbjct: 241 EYRRNSRSDYRRPHDDEYRRPRGDE 265


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 120 DCGSQLATVQTVMVTGCSQDAKECVLRRNSNVSM 221
           DC SQL      M TG S+ AK+ V  R+  + +
Sbjct: 719 DCKSQLNAYLMQMRTGLSEKAKDHVYVRSKTLPL 752


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 305 KRYGHVHHHPVDVCG 261
           KR+ +  H P+ VCG
Sbjct: 151 KRFAYTRHEPIGVCG 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,894
Number of Sequences: 5004
Number of extensions: 41333
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)