Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_D04
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 33 0.14
04_04_1377 - 33064906-33065607 31 0.42
01_03_0055 + 12074512-12076155 29 1.7
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318... 29 2.2
06_03_0094 + 16573075-16573268,16574636-16574996 29 2.2
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 29 2.2
11_04_0175 + 14501275-14501287,14501512-14501540,14501905-145019... 28 3.9
08_02_0707 - 20212190-20214592 28 3.9
02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735 27 6.8
01_07_0326 - 42750189-42750965 27 6.8
05_05_0266 - 23694466-23696787,23696885-23697187 27 9.0
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 212 RQHEHRIHSESRAHQHNHRRPRGDD 286
R+ + HS SR+H+H+H R GDD
Sbjct: 1225 RRSSKKDHSSSRSHRHHHHRSSGDD 1249
>04_04_1377 - 33064906-33065607
Length = 233
Score = 31.5 bits (68), Expect = 0.42
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 158 GDRVQSRR*GVRAAKKQ*RQHEHRIHSESRAHQHNHRRPRGDDEHAH 298
G RV + + G+ A E + H H H H +P G+++H H
Sbjct: 157 GSRVDALQTGMMVAPTT-HHRERQKHHHHHHHHHPHLQPHGEEQHHH 202
>01_03_0055 + 12074512-12076155
Length = 547
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 224 HRIHSESRAHQHNHRRPRGDD 286
HR+H H +H+R RGDD
Sbjct: 357 HRVHHHHHHHNGHHKRRRGDD 377
>12_01_0403 -
3185897-3186931,3187200-3187311,3187425-3187735,
3188112-3188324,3188834-3189052
Length = 629
Score = 29.1 bits (62), Expect = 2.2
Identities = 23/83 (27%), Positives = 34/83 (40%)
Frame = +3
Query: 171 SQDAKECVLRRNSNVSMNIEFTPNQELTSITTDVHGVMMNMPIPFPLADRDACKDKGLTC 350
S K+ + R + + F EL S TTD G N L D C ++ LT
Sbjct: 386 SLSTKDAYIVREGDPVSEMLFVIRGELESSTTD--GGRTNFFSSITLRPGDFCGEELLTW 443
Query: 351 PLQPNVLANYTATLPVLKSYPKV 419
L PN N+ + ++S +V
Sbjct: 444 ALMPNPSLNFPQSTRTVRSVTEV 466
>06_03_0094 + 16573075-16573268,16574636-16574996
Length = 184
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 270 VHGVMMNMPIPFPLADRDACKDKGLTCPLQPNV 368
+HG ++++P P P A DA + TCP P V
Sbjct: 18 LHGCLVSLPPPPPPALEDARNHRHTTCPRLPPV 50
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3
Query: 222 NIEFTPNQELTSITTDVHGVMMNMPIPFPLADRDACKDKGLTCPLQPNVLANYTATLPVL 401
+I +PN + ++++D G + + A+ DA K + T Q N NY +T+PV
Sbjct: 435 SIALSPNVQWLAVSSD-KGTVHVFSLRVKDAEEDAKKGESATAGAQVNDNCNYGSTVPVT 493
Query: 402 KS 407
++
Sbjct: 494 QT 495
>11_04_0175 +
14501275-14501287,14501512-14501540,14501905-14501947,
14502284-14502426,14502527-14502733,14503530-14503601
Length = 168
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 84 YFWSVVKAKFYKDCGSQLATVQTVMVTGCSQDAKE 188
+FWS + KF++ S TV+ M+T +D++E
Sbjct: 17 FFWSAYRDKFWQVTYSGFTTVKIQMMTMSREDSEE 51
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 218 HEHRIHSESRAHQHNHRRPRGDDEH 292
H H HS S +H H+H G ++H
Sbjct: 500 HSHS-HSHSHSHSHSHSHVHGHEDH 523
>02_05_0498 - 29520062-29520758,29521552-29521860,29523525-29524735
Length = 738
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 233 HSESRAHQHN-HRRPRGDDEHAH 298
H E + H H+ H +P G+++H H
Sbjct: 703 HREQQKHHHHPHLQPHGEEQHHH 725
>01_07_0326 - 42750189-42750965
Length = 258
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 263 GYAGELLIRSEFDVHADVTVSSQHALLSVLTAPGHHDSLHG 141
G G+LL+ SEF A V V Q+ + + A G + G
Sbjct: 218 GPIGDLLVSSEFSKMASVLVMQQYVITAAAAAGGARRAADG 258
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 263 GYAGELLIRSEFDVHADVTVSSQHALLSVLTAP 165
G G+LL+ SEF A V V Q+ + + L P
Sbjct: 795 GPIGDLLVSSEFSKMASVLVMQQYVITAPLPPP 827
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,021,750
Number of Sequences: 37544
Number of extensions: 292855
Number of successful extensions: 760
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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