Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_D04
(519 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025467-10|AAB71040.2| 154|Caenorhabditis elegans He1 homologu... 51 4e-07
Z81136-5|CAB03460.2| 733|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z81513-7|CAB04179.1| 319|Caenorhabditis elegans Hypothetical pr... 29 1.5
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 29 2.6
U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusi... 28 3.5
U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusi... 28 3.5
AF077534-7|AAK71376.1| 319|Caenorhabditis elegans Prion-like-(q... 28 3.5
U88167-2|AAB42225.3| 908|Caenorhabditis elegans Hypothetical pr... 27 6.1
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AF025467-10|AAB71040.2| 154|Caenorhabditis elegans He1 homologue
protein 1 protein.
Length = 154
Score = 51.2 bits (117), Expect = 4e-07
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Frame = +3
Query: 114 YKDCGSQLATVQTVMVTGCSQDAKE----CVLRRNSNVSMNIEFTPNQELTSITTDVHG- 278
YK C S TV V GC K+ C+ ++ S + I F P+++ + T V
Sbjct: 22 YKVCKSD-GTVSQVKADGCELTVKDGKKVCLFKKGSRPIIQIAFKPSKDTDKLKTSVRAK 80
Query: 279 VMMNMPIPFPLADRDACKDKGLTCPLQPNVLANYTATLPVLKSYPKVSV-DVKWELKNEN 455
V + + FP + DAC G+ CP+ + ++ + +++P V V W+L +
Sbjct: 81 VGGSAMVDFPQTNSDAC-TYGVKCPVSAGENQIFEQSISITENHPAGEVIQVNWQLTRPD 139
Query: 456 NVDIICILVPSRI 494
+ +CI+ + I
Sbjct: 140 SGKEVCIIFLAEI 152
>Z81136-5|CAB03460.2| 733|Caenorhabditis elegans Hypothetical
protein W02B8.4 protein.
Length = 733
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +3
Query: 87 FWSVVKAKFYKDCGSQLATVQTVMVTGCSQDAKECVLRRNSNVSMNIEFTPNQELTSITT 266
FW ++ F DC +L + + + + D K + +N +S+ I EL T
Sbjct: 28 FWCLIAVLFVADCHGELKLEKELQIALDTNDIKSSLYYKNKLISLPISKEAGTELWQHWT 87
Query: 267 D 269
D
Sbjct: 88 D 88
>Z81513-7|CAB04179.1| 319|Caenorhabditis elegans Hypothetical
protein F26D2.9 protein.
Length = 319
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -3
Query: 364 FGWSGQVRPLSLQASLSARGNGMGMFIITPWT-SVVMLVSS*FGVNSMFMLTLLFLRSTH 188
FG G + L++ R + + +F+I T +V + + F + M+ LLFL +
Sbjct: 52 FGLFGSIFHLTVLTQKPIRNSSVTIFLIGIATCDLVRMFETIFSLGKMYYKQLLFLHISQ 111
Query: 187 SLAS*LHPVTMTVCTVAN 134
+ L + MT+ V N
Sbjct: 112 TCVPPLSYIDMTIFVVLN 129
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 143 RADCHGDRVQSRR*GVRAAKKQ*RQHEHRIHSESRAHQ-HNHRRPRGDD-EH 292
+A+ R +SR A +K+ + H H SR H+ H HR RG+ EH
Sbjct: 255 KAEMKRKRSRSRSTDRGADRKRSTEQHHHSHRSSRDHRDHRHRDHRGEHREH 306
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +2
Query: 212 RQHEHRIHSESRAHQHNHRRPRGDDEH 292
R H HR H H+ R DD H
Sbjct: 292 RDHRHRDHRGEHREHREHKEHRRDDRH 318
>U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform b protein.
Length = 561
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 218 HEHRIHSESRAHQHNHRRPRGDDEHAHT 301
H H H S H HN+++ + +D H H+
Sbjct: 246 HGHS-HGGSHGHSHNNKKTKKNDGHGHS 272
>U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform a protein.
Length = 519
Score = 28.3 bits (60), Expect = 3.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 218 HEHRIHSESRAHQHNHRRPRGDDEHAHT 301
H H H S H HN+++ + +D H H+
Sbjct: 204 HGHS-HGGSHGHSHNNKKTKKNDGHGHS 230
>AF077534-7|AAK71376.1| 319|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 48
protein.
Length = 319
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +2
Query: 188 VRAAKKQ*RQHE------HRIHSESRAHQHNHRRPRGDDEHAHTVXXXXQRRLQG*RPYL 349
V+ + Q RQH+ ++ H+ + AHQ ++ + + +HAH Q++ Q PY
Sbjct: 18 VQNTESQYRQHQPSYPQNYQNHNYN-AHQQHYHQQQQQQQHAHQQKQASQQQQQQQYPYN 76
Query: 350 PTPAKRAC*LYSHA 391
P+ A Y A
Sbjct: 77 NYPSPNAIKAYQAA 90
>U88167-2|AAB42225.3| 908|Caenorhabditis elegans Hypothetical
protein D2092.5 protein.
Length = 908
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 197 AKKQ*RQHEHRIHSESRAHQHNHRRPRGDDE-HA 295
++KQ +Q + H + +HQ+NH++ G+ HA
Sbjct: 469 SQKQQKQSNGKSHHQHSSHQNNHQKSNGNSNGHA 502
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 27.1 bits (57), Expect = 8.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 236 SESRAHQHNHRRPRGDDEH 292
S S+ H H+H++ R D EH
Sbjct: 112 SSSKHHHHHHKKERKDKEH 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,821,750
Number of Sequences: 27780
Number of extensions: 242512
Number of successful extensions: 649
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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