Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D03
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    29   0.44 
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    28   1.0  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    27   1.3  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    27   1.3  
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    27   2.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   5.4  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   9.5  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 115 KETQRLVSLNIMTLSEKKPWLAETVQLCLIC 207
           +E+Q++  L+I T  E+ PW +    L L+C
Sbjct: 656 RESQKIYKLSIDTFGEEVPWTSTPETLVLLC 686


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 252 TAKLAFTANITKNDDRVVYSLLLNEKGGVEADVTISIL 365
           T+ +AF  +IT++ D +V S  L E+G  +    I IL
Sbjct: 317 TSLIAFNVSITEDADIIVVSTFLTEEGLTDYQRVIKIL 354


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 305 YDPVIVLS-NVRGEREFRSTFSIWPGQVKLTIIRHIKQSCTVSASQ-GF 165
           ++ +I+ S N  G+R+F   F  W G V L I R  +     S+S+ GF
Sbjct: 223 FEGIIMNSMNAVGDRDFVIEFMFWAGMVMLHISRFAEDLIIYSSSEFGF 271


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/44 (22%), Positives = 25/44 (56%)
 Frame = -2

Query: 449 VICTETTSYNVITATLENWFM*LATSTIENTNSHICFYSAFLVQ 318
           +IC +  +Y  +  T+E      ++ ++E+ N H+CF+  + ++
Sbjct: 320 LICYKDAAYQKLKLTIEE-----SSKSVEHANQHVCFHYDYTLE 358


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 503 GSSLALYKLNYTTKMCQSVICTETTSYNVITATLEN 396
           G +  LYKL    K+ QSV+   T  +NV T T +N
Sbjct: 33  GKTTILYKL----KLNQSVVTIPTVGFNVETVTYKN 64


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 406 PLKIGSCNWPLPPSRILIVTSASTPPFSFRSKEYTT 299
           P  I S +  + P++   VTS     F+F SKEY +
Sbjct: 44  PSSIESVSTLIQPNKSQSVTSPYVKQFTFSSKEYNS 79


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 93  PLRRDILKGDATFGFSKHHDLIGKEA 170
           P R D+L  ++T+G + H   + KEA
Sbjct: 220 PKRPDVLITESTYGTASHQPRLEKEA 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,821
Number of Sequences: 5004
Number of extensions: 42953
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)