Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0005_D03
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1083 - 25922670-25922867,25922962-25923213,25923674-259238... 29 3.1
11_03_0187 - 11334733-11334802,11334975-11335055,11336087-113361... 28 4.1
04_04_1381 - 33135823-33136155 28 5.5
01_06_0555 - 30182818-30183169,30183268-30183674,30183804-301847... 28 5.5
12_02_0299 - 17051570-17052474,17053542-17053755 27 7.2
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 27 7.2
04_04_0950 + 29609484-29611025 27 7.2
09_01_0120 + 1839097-1839277,1840315-1840443,1841694-1841833,184... 27 9.6
08_02_1409 - 26864544-26864658,26864787-26864916,26864953-268652... 27 9.6
>12_02_1083 -
25922670-25922867,25922962-25923213,25923674-25923856,
25923945-25924015,25924058-25924169,25924524-25924583,
25924665-25924780,25925172-25925244
Length = 354
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 228 LTGPDAERTAKLAFTANITKNDDRVVYSLLLNEKG 332
LTG D A ++T +D+ YSLL++ G
Sbjct: 247 LTGKDVNTLANFVSEVSLTLHDNNTAYSLLISNNG 281
>11_03_0187 -
11334733-11334802,11334975-11335055,11336087-11336155,
11337282-11337601
Length = 179
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 93 VINIFRIIMCTAPIVLLYSYFLSW 22
+I++ + CTAP+VL +S F+ W
Sbjct: 134 IIHVVFLKNCTAPVVLKHSVFVPW 157
>04_04_1381 - 33135823-33136155
Length = 110
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 251 TFSIWPGQVKLTIIRHIKQSC-TVSASQGFFSDKVMMFRETKRCVSF*NIS 102
+F +WP + L + RH+ + C + + F + ++ MF +R V +S
Sbjct: 28 SFLVWPFNLVLPLARHLPRVCVALRGAAEFLAGEMRMFLSGRRRVQLPQLS 78
>01_06_0555 -
30182818-30183169,30183268-30183674,30183804-30184773,
30184829-30184902,30184941-30185084,30185186-30185365,
30185448-30185988,30186081-30186538,30187723-30187901,
30187998-30188052,30188217-30188468
Length = 1203
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 293 IVLSNVRGEREFRSTFSIWPGQVKLTIIR 207
++L VRGE +F S ++P + +T+++
Sbjct: 355 LILDQVRGELQFESVRFVYPSRPNMTVLK 383
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -3
Query: 412 PRPLKIGSCNWPLPPSRILIVTSASTPPFSFRSKEYTTLSS 290
P P S WP PP L S PP + K+ +T SS
Sbjct: 326 PPPPPPPSFPWPFPPLAPLFPPYPSPPPSMYSRKDPSTWSS 366
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 222 FYLTGPDAERTAKLAFTANITKNDDRVVY 308
FY+TG E+ K F +TK + V+Y
Sbjct: 596 FYITGSSKEQLEKSPFLERLTKKNYEVIY 624
>04_04_0950 + 29609484-29611025
Length = 513
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 174 ACRNGAALFNMSYYGKFYLTGPDAERTAKLAFTANITKNDDRVVYSLLLNEKGGVEADVT 353
A NG +F + YG L GP+ K F+ + S++ GGV A
Sbjct: 410 AILNGLEVFKLHKYGTHSLAGPNPPIPLKQVFSTVDGSRSESRKKSVVCAAVGGVAAGCF 469
Query: 354 ISIL 365
+++L
Sbjct: 470 LAVL 473
>09_01_0120 +
1839097-1839277,1840315-1840443,1841694-1841833,
1842291-1842419,1845311-1845463,1845803-1845904,
1846797-1846976,1847070-1847149,1847413-1847442,
1847958-1848057
Length = 407
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 312 LLLNEKGGVEADVTISILDGGSGQ--LHEPIFKGR 410
L+ +G EADV ++ DGGSG LH +GR
Sbjct: 5 LVTTGRGRGEADVLAAVADGGSGSRALHLAATEGR 39
>08_02_1409 -
26864544-26864658,26864787-26864916,26864953-26865283,
26866507-26866626,26867489-26867821,26867915-26868001,
26868093-26868320,26868434-26868565,26868649-26868861,
26869376-26869417,26869829-26869894,26870230-26870274,
26870367-26870429,26870757-26870827,26871149-26871249,
26871458-26871534,26872415-26872459
Length = 732
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 276 NITKNDDRVVYSLLLNEKGGV 338
N+T ND R VYSL++ + V
Sbjct: 565 NVTANDKRAVYSLIVQSRANV 585
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,768,671
Number of Sequences: 37544
Number of extensions: 269747
Number of successful extensions: 620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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