Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D03
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...    50   1e-06
U64842-10|AAB37080.1|  402|Caenorhabditis elegans Hypothetical p...    34   0.075
AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z48178-1|CAA88204.1|  471|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical pr...    27   6.5  
L11247-1|AAA28010.2|  484|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AC024847-6|AAF60855.1|  909|Caenorhabditis elegans Patched relat...    27   8.6  

>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
           protein Y106G6H.5 protein.
          Length = 855

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
 Frame = +3

Query: 99  RRDILKG-DATFGFSKHHDLIGKEALACRNGAALFNMSYYGKFYLTGPDAERTAKLAFTA 275
           R  ++ G DA  G  +  + +  E  ACR    L +MS + K+ +TG DA    +   +A
Sbjct: 479 RNALMSGQDALIGKPEWFERVASEYEACRERVGLMDMSSFSKYDITGEDAVEYLQFLCSA 538

Query: 276 NITKNDDRVVYSLLLNEKGGVEADVTISIL 365
           N+ +     VY+ + ++KGG   D T+S L
Sbjct: 539 NVDEPIGTTVYTGMQHQKGGYVTDCTLSRL 568


>U64842-10|AAB37080.1|  402|Caenorhabditis elegans Hypothetical
           protein F25B4.1 protein.
          Length = 402

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +3

Query: 156 IGKEALACRNGAALFNMSYYGKFYLTGPDAERTAKLAFTANITK-NDDRVVYSLLLNEKG 332
           I +  +  R   +LF++S+  + Y+TG D     +   TA++    ++    S+  NEKG
Sbjct: 58  IKESTIHTRKHVSLFDVSHMLQTYITGKDRVAFIESLTTADVQGLQENSGTLSVFTNEKG 117

Query: 333 GVEADVTISILD 368
           G++ D+ I   D
Sbjct: 118 GIKDDLIIMKTD 129


>AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical
           protein H24D24.1 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/48 (37%), Positives = 30/48 (62%)
 Frame = -1

Query: 183 FCKPRLLFR*GHDV*RNQTLRLLLEYLFVTVINIFRIIMCTAPIVLLY 40
           +  PR+++  G +  +N+TL LL+E +F T+I    II+    IVL+Y
Sbjct: 199 YTSPRIIYSMGPEEYQNETL-LLVEGIFFTLIP--SIILPIVTIVLIY 243


>Z48178-1|CAA88204.1|  471|Caenorhabditis elegans Hypothetical
           protein C05C10.1 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -3

Query: 397 IGSCNWPLPPSRILIVTSASTPPFSFRSKE 308
           +G C WP  P       SAS PP  F   E
Sbjct: 377 VGCCQWPFSP----YTNSASKPPMDFECSE 402


>U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical
           protein D1005.1 protein.
          Length = 1106

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 KNDDRVVYSLLLNEKGGVEADVTISIL 365
           +NDDRV   +LL E GGVE    + +L
Sbjct: 705 QNDDRVKMIVLLGEVGGVEEYKIVDLL 731


>L11247-1|AAA28010.2|  484|Caenorhabditis elegans Hypothetical
           protein F09G8.5 protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 477 ELYDEDVPKCDLH*NH*LQRNNR 409
           E  ++ +P+CD+H +H   R+NR
Sbjct: 233 EAIEDSIPECDMHNSHYSARSNR 255


>AC024847-6|AAF60855.1|  909|Caenorhabditis elegans Patched related
           family protein 21 protein.
          Length = 909

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 147 DV*RNQTLRLLLEYLFVTVINIFRIIMCTAPIVLLYSYFLSW 22
           D   N+  + ++ Y  V ++++   I CT  I   Y  + SW
Sbjct: 280 DTEMNKDAQKMVPYFIVGIVSMIIFIFCTVSISASYYGYFSW 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,095,994
Number of Sequences: 27780
Number of extensions: 242798
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)