Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D02
         (420 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   1.6  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   1.6  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.4  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       20   8.5  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    20   8.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    20   8.5  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 73  ASIQNYLNIMYCIKSIWDTRSSLV 2
           A IQNY  ++   + +WD    L+
Sbjct: 156 ADIQNYATLIKEFREVWDQHGLLL 179


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 258 THTIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTLRRI 139
           T +IR  +++   + + Y      LCH +  S   T+R I
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLCHIEIESFGYTMRDI 195


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +1

Query: 28  WI*YNTLYLGNFVYWLYXXXXXXN*KYY 111
           W+  N  +L  F+YW+       N  Y+
Sbjct: 428 WLKNNPEFLDAFLYWVDEILANHNDVYF 455


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 303 WRQVHEYFKGS*SRCIICKKTRS 371
           W  ++   K     C +C+KT+S
Sbjct: 158 WPNMYRTIKKRLRSCDLCQKTKS 180


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 322 YSCTCRQRDTVTLS*TNVTTPHTHYTQVHE 233
           Y+ + RQR +  LS  +   P+ + TQ+ E
Sbjct: 467 YTSSKRQRTSPQLSPMSSLPPYPNRTQITE 496


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 392 YDATDDIRACFFANY 348
           YDAT     C+F+N+
Sbjct: 17  YDATPARIVCYFSNW 31


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,969
Number of Sequences: 336
Number of extensions: 1918
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)