Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0005_D01
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0806 + 21403911-21404203,21406377-21406507,21406851-214069...    28   4.8  
10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663...    27   8.5  

>08_02_0806 +
           21403911-21404203,21406377-21406507,21406851-21406963,
           21407478-21407594,21407611-21407803,21407890-21408105,
           21408272-21408909
          Length = 566

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 19  EDYFNLKKRNLLDVVLIIFFSLKIILVFPFNNDFLVMFLLF 141
           ED  NLK R   +V+ ++  S K I+ + F NDF ++   F
Sbjct: 251 EDEHNLKFRGFREVIDLLSSSQKPIISYNFLNDFTMIHSKF 291


>10_07_0079 +
           12665141-12665167,12665613-12665702,12665783-12666310,
           12666341-12667741
          Length = 681

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 537 YASVIGIELHNRVNLANLTFGPSLELVNFVLCP 439
           ++SVI +E++   NL  +   PSL+ +  V CP
Sbjct: 549 FSSVIKLEVYGNPNLERIVDLPSLQNLTIVNCP 581


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,228,171
Number of Sequences: 37544
Number of extensions: 236617
Number of successful extensions: 338
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)